Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0652 ATGGTAACCCTTTCGCTTCTGCATAATCTAAACCTCGTCGTTCACTTCAACCCTTCCACACACCAAAACCCTATTTTCTCACACCAAAACCCTATTTCTTCAATCTCTCTCAAACCTTCACCTCTTCGCTGTTCAAATTCCGCCAATGTTCCCGCTCAATCTCCCTCACCTCCGATTCGCATCCGACGCTGCACAAAAATTGAAGCGCAACGTGCTCTATTCGATTACCTTTACTACACTCAATGTTACACTTTCATTGACGCAGATTTCATTGCCAAAAACTCTCCATGTTTCATCGATGAACTTATCCTCAGAGTCAGAGTCAACAACAGAGACGATGATTTTGATCGGGTTCTCAGAAGGTACCTTATGTATCACCCTATTAATGAATTTGAACCATTTTTAGAGAGTATAGGGATTAAACAAAGTGAATTGAAGTTACTTCTGCCTAAAGATTTGTTTTTTCTTCGTGATGATAGTGTTTTGGTTGATAATTTTCATGTCTTGTTTAATCACGGGGTTCCGAGGAATAGAATGGGGAAAATTTATAGAGAAGCAAGAGAGGTTTTTGGGTATGGGAGTGGTGTTTTGTCGAAGAAATTTGAAAGTTATGAAAGTTTGGGTTTGAGTAAATCATCTCTTGTCAAGCTGTTTGTTTGTTGTCCATTGCTTTTAGTTGGCGACGAGGTTGATTCTCAATTTGTTGTTGTTCTTGATTGGTTGAAGAGAATTGGGATTGAGACTGAATGGTTTGTGAGTTGTATGTGTTCTAAAAGAACATATAGATGGAAAATGATTATTGATAGTATTGAGCTTTTTCATCAAGGGGGATATTCTGAGAAACAAATGTATGATTTGTTTAAGGCGGATCCAAAATTGTTGTCAGAGGGTTTAGAAAAGAAGGCATTTTTGGTTATAGGTCGGTTGATTAAGTTGGGTCTTGACGTGAATGAGATTTGTTCTTGTTTTAGAGAGCATCCTGAAATGTTGTCAAGTCCGCGTATGAAAAATTTGATGTTTGTGATTACTTTTATGTATAATATTCGAATGGAACAAGATGTTATTGCTCATGTTTTGCATAACCACATGCATCTCCTTGGCAGACATTCAATAAAAGGTTATAAAACGATGTGTAAAGAGTTGGGAGTTGGAAAAGCTAGTTTATGTCAAATGATACAGGATGATCCGTTAAAGTTTTTTGGTTTGGCTTTAAAACCGACGCAAAAGAAGGATATAAATGAACTCAGCTATGACCCGCGTTGGTATTTGGAGAAAACAAACTTCTTGCGGAAACTTGGGTATACTGATAACTCTGAGGAGATGGAAATAGCTCTGAAGAAGTTTCGAGGAAGAGGTGATAAGTTACTAGAAAGATTTGATTTCTTGATTGAAGCTGGTTTGGAATATAACACTGTAGTTGGAATGGTAAAGCAAGTTCCTGCAATTCTAGCCATTAAAAAAACTTCAATGCAAAAGAAGATTGATTTCTTAACAAACACTTTAGATTACCCAATAGAACGTCTCGTGAGAAATCCAAAATATGTGTTATATGATTTGGATAAAATTTTCCCAAGATTTGCAATGTATGAGTGGTTGAAGAAGAGGAATGCAATACATCGTGAGTTATTCTTGAGTACCATAGTTTCAATTTCTGAGAAACAGTTTCTAAAACTCTTTGTGAATGCGCATCCTGAAGGTCCAATAGTTTGGCAAACTATAAATAGTTTATCTAACAAATATAAGAATTAA 1749 0.3631 MVTLSLLHNLNLVVHFNPSTHQNPIFSHQNPISSISLKPSPLRCSNSANVPAQSPSPPIRIRRCTKIEAQRALFDYLYYTQCYTFIDADFIAKNSPCFIDELILRVRVNNRDDDFDRVLRRYLMYHPINEFEPFLESIGIKQSELKLLLPKDLFFLRDDSVLVDNFHVLFNHGVPRNRMGKIYREAREVFGYGSGVLSKKFESYESLGLSKSSLVKLFVCCPLLLVGDEVDSQFVVVLDWLKRIGIETEWFVSCMCSKRTYRWKMIIDSIELFHQGGYSEKQMYDLFKADPKLLSEGLEKKAFLVIGRLIKLGLDVNEICSCFREHPEMLSSPRMKNLMFVITFMYNIRMEQDVIAHVLHNHMHLLGRHSIKGYKTMCKELGVGKASLCQMIQDDPLKFFGLALKPTQKKDINELSYDPRWYLEKTNFLRKLGYTDNSEEMEIALKKFRGRGDKLLERFDFLIEAGLEYNTVVGMVKQVPAILAIKKTSMQKKIDFLTNTLDYPIERLVRNPKYVLYDLDKIFPRFAMYEWLKKRNAIHRELFLSTIVSISEKQFLKLFVNAHPEGPIVWQTINSLSNKYKN* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0652 582 SMART mt_12 215 247 IPR003690 GO:0003690|GO:0006355
Psa2g0652 582 SMART mt_12 320 351 IPR003690 GO:0003690|GO:0006355
Psa2g0652 582 SMART mt_12 180 210 IPR003690 GO:0003690|GO:0006355
Psa2g0652 582 SMART mt_12 473 504 IPR003690 GO:0003690|GO:0006355
Psa2g0652 582 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 49 574 - -
Psa2g0652 582 Gene3D Transcription termination factor 3, mitochondrial 303 571 IPR038538 -
Psa2g0652 582 Gene3D Transcription termination factor 3, mitochondrial 115 302 IPR038538 -
Psa2g0652 582 Pfam mTERF 271 434 IPR003690 GO:0003690|GO:0006355
Psa2g0652 582 Pfam mTERF 454 556 IPR003690 GO:0003690|GO:0006355
Psa2g0652 582 PANTHER CGI-12 PROTEIN-RELATED 49 574 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0652 Psa-Chr2 34373556 34375304 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Psa2g0652 mTERF 1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0652 - - gmx:100803162 576.63