Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0617 ATGGAAAATTCAGACCACGACGAACCCGACAAGAAGAGGCCTCATCTTCTCACTCCCGTTTCTTCCCGCATCTTCAGAAACTCTTCCAACCATTCTCCTAACACCAAAAATGCTGATGCAGAAGCCTTACAACTCCAAAACCAGAAGCTTGTTCAACAAACAGAAATCCAGAAACAGGCTTTACAGGATCTTGAAGAAAAAACAAGAGAATTAAAAGAAAGACAAAATTCCTATGATGACTTATTAATTGCATTCAACCAACACTGGGAACAGCTGGTTGATGATATGGCTCTTCTTGGTATACAAGCTGGGAGAGACAAAGATTCTTTGCAAACTTTAGATTACCTTGATAATCCTCAAGGTTCACTTCCTCCTTGTCCTCCAAATGATCTATTTCTATGTAAATTAATCCAGAAAGATTCTATTGAAGGAAGCAGTAATGATGAGATAACTTATTTTGTTGAGGAAGCCCTTGCTTTGCGTCAGTTATCTACTAGGGAGTTATTGGAACTCATTCATAGTACTGTTGATGATCAGATGAAAAGAGTTGAAGATATGGCTCATGTTTTACATGGAGATTTATCTACGGAAGATGTTATCATCCAAATGTCTAAGATTGACGATATGAGGAAAAAGGAGGTTGACAATTTTTGTGAAGTAATTAATACTCTCCATGCAAAACACAAAGAATATACTGTTGGCATTCAGAATTATATAGACGAGTGCTTACAAGATCAATCCGACATAAAACGCCTTAAAGGAGAGCTTGACGAGATCGTGGCTGAACTTGAAGAGAGTAGAAGAAAACTAGTCAGTCTGAAAATGCAAAAGGATGCAGCTACGGGAATGAATTCCTCCAGTGCAGATGCAGTGAATGGAAACGTGTCTCCTGAAAAGCCTGCTGACAGAGCCTTGGGTTTGCCTGAGTTGAAGAATTTAATTGAGGAAGCCAAGATAGTGGATGCTGATCGTCTTTCTGAGCTTCAAGATGCACAGGAAAAAAATCAAATCTTGACAAAGCAGTTCCAAGAACTTCAGAATGAACTGAATGACGATAAATATGTACGCTCTTCTCGAGTATATTCTTTGGCAAATGATCAACTTCAACATTGGATTGCGGAATTGGATCGATATAAATCATTGGTGGAGTCTCTGCAGGCTGGAAAGGCTAACATCGCAAAATGGGAGAAGGAGTTGAATCTTAAATTGGAGTCTTGTGATAATGCAAGGCGCATACTTGACAATTTTGACTCCAGGACTGATGAGCTCGAGCTGCAGTTGGAGAAATGTATTATCGAAAGGAATCATCTTGAAATTAGGATGGAAGAGGAGAAACAGGATACTGGGAGAAAAGATATCAAAGCTGAGTTTCGTGTGATGGCCTCGGCTTTATCTAAAGAAATGGGGATGATGGAAGCACAATTAAAGCGATGGAAGGATGCTGCTCTTGAAGCTGTATCATTACGTGAGAAAGCACATTCACTAAGAGCAGAATTGAGTGGGAAGACAAGCGAACTCAAGAGCCTTGCAAACAAATGTGCCGATCAGGTTTTGGAAATAAAGTCTTCAAAATCATTGATTGAAAAGTTACAGCAGGAGAATCAGGAGTTAGAATTTGTTCTGGATATGTATGGCCTGGAGGATTATCAGAAAAGCTTGCCAGAAATTAGAGAATCTGAAAGTAAAGCTCGCTCTCAAGCTGAAATGCTGAAAAATGCTTTAGATGAACATGGTCTAGAGTTGAGAGTAAGAGCTGCTAATGAAGCTGAAGCTGCTTGTAAACAAAGGCTCTCTGCTGCAGAAGCTGAAAAAGAGGAGTTAAGGGCCCAGCTTGATGAAACTGAAAGAAAAAAATCGGAGCTGGCCGAGGCTATTAAAGTTAAAGAGGCTGAGGCAGAAACCTACATCTCTGAAATTGAGACTATTGGTCAAGCGTATGAAGATATGCAGACACAGCACCAACATCTGCTGCAGCAGGTGGCTGAGAGGGATGACTATAATATCAAGCTTGTATCAGAAAGCGTGAAGGCAAAACAGTTACATAGCGCTTTACTGTCAGAAAAGCAAGCTTTAGCAGATCAACTTAAACAGATTAATTCTTTGATAGAAAATTCAAAGAAAAAGATTGCAAGTAGTGTAGAACAGATACAATGTCTTCTATCAGAAGCCGCCAAATGTACTCAAGAGGAAAAACACATTGCAGCGGCTTTAGAGTTTGCCAGGAGGGAATTGGCTGATGCTGAGAAGGAATTGAAGTTGCTCAAGTCTATTGCTTCATCCTCAGAGAAAGAATACGACCAAATTCAGAAAGATGTGGAAGCTTTTGAAAAGGAATTGGATAGCGAAAGGAGTTCACGGAAGAAGCTTGAGGAAGAACTAATGGAATTGAATAACCAAATTGCTGAGCTGAAAACTGAAAATGGAGAGACCGCAGTACAACAACTTGAAGAAGAAATAAGAGTTTGCAAGAACATGATCAAGTGTACTGTCTGTTCTGACCGTCCAAAGGAGGTTGTGATTTTGAAGTGCTATCATCTGTTCTGCAATCCATGCATACAAAGAAATCTTGAACTCCGTCACCGCAAATGTCCTGCCTGTGGAACAGCATTTGGGCAGAGCGATGTTCGCTTTGTTAAAATTTGA 2643 0.4007 MENSDHDEPDKKRPHLLTPVSSRIFRNSSNHSPNTKNADAEALQLQNQKLVQQTEIQKQALQDLEEKTRELKERQNSYDDLLIAFNQHWEQLVDDMALLGIQAGRDKDSLQTLDYLDNPQGSLPPCPPNDLFLCKLIQKDSIEGSSNDEITYFVEEALALRQLSTRELLELIHSTVDDQMKRVEDMAHVLHGDLSTEDVIIQMSKIDDMRKKEVDNFCEVINTLHAKHKEYTVGIQNYIDECLQDQSDIKRLKGELDEIVAELEESRRKLVSLKMQKDAATGMNSSSADAVNGNVSPEKPADRALGLPELKNLIEEAKIVDADRLSELQDAQEKNQILTKQFQELQNELNDDKYVRSSRVYSLANDQLQHWIAELDRYKSLVESLQAGKANIAKWEKELNLKLESCDNARRILDNFDSRTDELELQLEKCIIERNHLEIRMEEEKQDTGRKDIKAEFRVMASALSKEMGMMEAQLKRWKDAALEAVSLREKAHSLRAELSGKTSELKSLANKCADQVLEIKSSKSLIEKLQQENQELEFVLDMYGLEDYQKSLPEIRESESKARSQAEMLKNALDEHGLELRVRAANEAEAACKQRLSAAEAEKEELRAQLDETERKKSELAEAIKVKEAEAETYISEIETIGQAYEDMQTQHQHLLQQVAERDDYNIKLVSESVKAKQLHSALLSEKQALADQLKQINSLIENSKKKIASSVEQIQCLLSEAAKCTQEEKHIAAALEFARRELADAEKELKLLKSIASSSEKEYDQIQKDVEAFEKELDSERSSRKKLEEELMELNNQIAELKTENGETAVQQLEEEIRVCKNMIKCTVCSDRPKEVVILKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0617 880 Coils Coil 427 447 - -
Psa2g0617 880 Coils Coil 556 576 - -
Psa2g0617 880 SUPERFAMILY RING/U-box 827 871 - -
Psa2g0617 880 PANTHER RING FINGER PROTEIN-RELATED 21 880 IPR013956 GO:0004842|GO:0010390
Psa2g0617 880 Coils Coil 249 276 - -
Psa2g0617 880 MobiDBLite consensus disorder prediction 1 37 - -
Psa2g0617 880 Coils Coil 730 818 - -
Psa2g0617 880 Coils Coil 520 547 - -
Psa2g0617 880 ProSitePatterns Zinc finger RING-type signature. 843 852 IPR017907 -
Psa2g0617 880 Coils Coil 47 84 - -
Psa2g0617 880 Coils Coil 688 708 - -
Psa2g0617 880 CDD RING-HC_BRE1_like 826 867 - -
Psa2g0617 880 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1 21 880 - -
Psa2g0617 880 Coils Coil 583 631 - -
Psa2g0617 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 809 879 IPR013083 -
Psa2g0617 880 MobiDBLite consensus disorder prediction 21 37 - -
Psa2g0617 880 MobiDBLite consensus disorder prediction 1 17 - -
Psa2g0617 880 SUPERFAMILY Tropomyosin 687 829 - -
Psa2g0617 880 Coils Coil 328 348 - -
Psa2g0617 880 SMART ring_2 828 866 IPR001841 -
Psa2g0617 880 Pfam Zinc finger, C3HC4 type (RING finger) 827 869 - -
Psa2g0617 880 ProSiteProfiles Zinc finger RING-type profile. 828 866 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0617 Psa-Chr2 31958145 31975991 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0617 828 875 RAD5 or RAD16-like Gene Family AT5G05130 35.417 1.29e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0617 K10696 - gmx:100796610 1264.98