Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0599 ATGGATCATCATCATCAACATCATCATCATCATATCATCAACAATATGGAAACTAGTGATAGGAAGTTTCTTTCATTTCCTCTCAACAATAACTCTTCTGGTGTTCAAGAACATCATCATCATCATCATCATAACTTTACTCACCAGAACAACAACAACAACAACAATAACAGCACTACAAGTGTTGTTGTTAGGGATAAAATCATGGCTCATCCTCTCTTTCCTCGTCTCTTGTCCTCTTACCTCAATTGCTTAAAGGTTGGAGCACCACCTGAAGTGGTGGCTAGCTTAGAAGAATCATGTGCAAAATGTGAAATATTGAATGGTTCTTCAGGAAGGACAGGAACTAGTTCTTGTATAGGTGAAGATCCAGGTTTGGATCAGTTCATGGAGGCATATTGTGAGATGCTTATCAAATATGAGCAAGAGCTTACAAAACCCTTCAAGGAAGCTATGCTTTTCCTTTCAAGAATTGAGTCTCAGCTTAAGGCTCTTGCTGTTTCAACTGACTTTGGTCAAAGCGAACCACCGTCAATGAATGAGATTGATGTTCATGAAAACAACTTCGATACTCAAGGTGAAGATCAAGAATTAAAAGTGCAGCTGTTGCGCAAGTATAGCGGATATCTTGGCAGCCTCAAGAAAGAGTTTTTGAAGAAGAAAAAGAACGGAAAGTTACCAAAGGAAGCGCGTCAACAACTACTCGATTGGTGGAACCGGCATTACAAATGGCCCTATCCATCGGAATCTCAAAAACAAGCACTTGCAGAATCGACAGGGCTAGATTTGAAACAGATCAACAACTGGTTCATTAATCAGCGAAAACGTCACTGGAAACCTTCTGAGGATATGCAATTTGCTGTGATGGATGCCACAAACTACTACATGGAAAATGTAATGTGCAAACCATTTCCCATGGATGCCATGCCTATGCTTCTTTAG 942 0.4002 MDHHHQHHHHHIINNMETSDRKFLSFPLNNNSSGVQEHHHHHHHNFTHQNNNNNNNNSTTSVVVRDKIMAHPLFPRLLSSYLNCLKVGAPPEVVASLEESCAKCEILNGSSGRTGTSSCIGEDPGLDQFMEAYCEMLIKYEQELTKPFKEAMLFLSRIESQLKALAVSTDFGQSEPPSMNEIDVHENNFDTQGEDQELKVQLLRKYSGYLGSLKKEFLKKKKNGKLPKEARQQLLDWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENVMCKPFPMDAMPMLL* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0599 313 MobiDBLite consensus disorder prediction 34 56 - -
Psa2g0599 313 Gene3D - 215 288 - -
Psa2g0599 313 CDD homeodomain 229 281 IPR001356 GO:0003677
Psa2g0599 313 SMART ELK_2 197 218 IPR005539 GO:0003677
Psa2g0599 313 ProSiteProfiles ELK domain profile. 197 217 IPR005539 GO:0003677
Psa2g0599 313 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 9 304 - -
Psa2g0599 313 SMART KNOX1_2 62 106 IPR005540 GO:0003677|GO:0005634
Psa2g0599 313 SMART KNOX2_2 116 167 IPR005541 GO:0003677|GO:0005634
Psa2g0599 313 SMART HOX_1 219 284 IPR001356 GO:0003677
Psa2g0599 313 SUPERFAMILY Homeodomain-like 219 291 IPR009057 -
Psa2g0599 313 PANTHER HOMEOBOX KNOTTED-LIKE PROTEIN 9 304 - -
Psa2g0599 313 Pfam Homeobox KN domain 237 276 IPR008422 GO:0003677|GO:0006355
Psa2g0599 313 Pfam KNOX2 domain 119 165 IPR005541 GO:0003677|GO:0005634
Psa2g0599 313 Pfam ELK domain 197 218 IPR005539 GO:0003677
Psa2g0599 313 ProSitePatterns 'Homeobox' domain signature. 255 278 IPR017970 GO:0000981|GO:0006355
Psa2g0599 313 ProSiteProfiles 'Homeobox' domain profile. 217 280 IPR001356 GO:0003677
Psa2g0599 313 Pfam KNOX1 domain 64 105 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0599 Psa-Chr2 30107984 30111025 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0599 43 307 Homeobox Transcription Factor Family AT1G62360 64.158 3.44e-109 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Psa2g0599 KNOX2 8.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0599 - - cam:101495840 499.204