Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0579 ATGCCATGCCCAACCTTGTTAACACTACTCATCCTCATAATCTCCATCCCCAAAACACTATCCCAACAAGAATACGTTGCTCTCAGACAACCAGATTGTGAACACACATACACCCCAACATTAGGCAACATTTGCAACAGCGTCAATTCATGTCAATCTTACCTCACTTTCAAATCAAACTCTCTATACAACACATCCACTTCCATTTCCAACCTCCTCAACTCTTCATCTTCTCTCGTCTCTCAGTCCAACAACATCTCCACCCTCCAAATCATCCCCGCCGACACCGTCATAACCGTCCCCGTTACCTGTTCCTGTTCCGGTAACAACAAATACTATCAACATAACTCTACCTACACTTTGAATATCGTCGGTGAAACCTATTTCTCTGTCGCTAATTACACCTACCAGACTCTTACCTCCTGTCAAGCTCTTATTGATCAAAATACTTACCCAGTTCGAAACCTCTCTGTTGGTCTCAACTTGACTATTCCTCTCCGATGTGCTTGTCCCACCAAGAACCAGACTGATCAAGGCTTTAAGTATCTTCTCACCTACTTGATCTCTCAAGATGAAACGGTTTCTTCCATTGCTGATATTTTCAGTGTTGATCCTCAAAGCATTCTTGATGCCAACGAGCTTTCTTCTGATTCCCCTATATACGCTTTCTCACCACTTTCAATCCCTCTCAAAACGGAACCACCCAAAAATATAATAAGAGCAGCTTCACCGCCGGAGTCTCCGCCGCAAACTCCTCCCGCGGGTGGTGGTTCCTCCTCTTCCAAGAAATGGGTCATCGTCGGTGTCGTGGTTGGGGTTGTTGTATTTCTTATCGTGATTCTTGCTGTATTTTTTCTCTGTTTCTATAAACGGCGGCAGCCGCCTCCGAAGCTACCACCGCCGGCGGTTCAGAAATTATGGGACTCTCACGCCAAGAAGGTTTCCTCAACAACTCAATCTTCGTCTCTTTCTTCTGAGGGGATTCGTTATGCGGTTGACTCGTTGACTAAGTACAAGTTTCACGATTTGCAAAATGCAACCAAGTTTTTCGGCGAAGAGAACAAGATTAAAGGTTCTGTTTATAGAGCTTCTCTTAAAGGTGATGATGCTGCTGTTAAGATTCTGAAAGGTGATGTTTCTTCTGAGATAAACATTTTGAAGAGGATTAACCATGCCAATATTATAAGGTTGTCTGGTTTTTGTGTCTACAAAGGTAACACTTATCTGGTTTATGAGTTTGCTGAGAACAACTCTCTTGACGATTGGCTTCACTCTGAGAATTCGAATTCCATGTGTTTGAGTTGGTTTCAGAGAGTTCAGATTGGATATGATGTTGCTGATGCACTTAACTACCTTCATAACTATGCTAATCCTCCTCATGTTCATAAGAATTTGAAAAGTGAAAATATTCTAATAGATGGAAAATTCAGAGGTAAAGTTTCAAATTTTGGGTTGGCTAGAGTTATGGAGAATGAAGACAGTGAAGGGTTTCAATTAACAAGACATGTTGTAGGAACTCAAGGTTACATGGCTCCTGAATATATTGAGAATGGTTTGATTACACCAAAGATGGATGTTTTTGCATTTGGTGTTGTGATTTTGGAGCTTCTTTCTGGAAGAGAAGTTGTTGGTGGTGACAAGAATAATGGTTTGTTGGGAGATCAGCTTTTATCTTCAACTGTGAATGAGGTTCTTGAAGGGGAAAATGATAGGGAGAAGCTTAGAGGTTTCATGGATCCAAATTTGAGAGATGAATACCCTTTGGATCTTGCATATTCAATGGCTGAGATTGCCAAGAGATGTGTTGCACGTGATCTAAACTCAAGACCAAATGTTTCAGAGGTTTTTATGGTTCTGTCTAAGATTCAGTCCTCTACACTGGATTGGGATCCATCTTCTAGATCTGCTAGCCAAGTTTCTGATAGTTGA 1929 0.4152 MPCPTLLTLLILIISIPKTLSQQEYVALRQPDCEHTYTPTLGNICNSVNSCQSYLTFKSNSLYNTSTSISNLLNSSSSLVSQSNNISTLQIIPADTVITVPVTCSCSGNNKYYQHNSTYTLNIVGETYFSVANYTYQTLTSCQALIDQNTYPVRNLSVGLNLTIPLRCACPTKNQTDQGFKYLLTYLISQDETVSSIADIFSVDPQSILDANELSSDSPIYAFSPLSIPLKTEPPKNIIRAASPPESPPQTPPAGGGSSSSKKWVIVGVVVGVVVFLIVILAVFFLCFYKRRQPPPKLPPPAVQKLWDSHAKKVSSTTQSSSLSSEGIRYAVDSLTKYKFHDLQNATKFFGEENKIKGSVYRASLKGDDAAVKILKGDVSSEINILKRINHANIIRLSGFCVYKGNTYLVYEFAENNSLDDWLHSENSNSMCLSWFQRVQIGYDVADALNYLHNYANPPHVHKNLKSENILIDGKFRGKVSNFGLARVMENEDSEGFQLTRHVVGTQGYMAPEYIENGLITPKMDVFAFGVVILELLSGREVVGGDKNNGLLGDQLLSSTVNEVLEGENDREKLRGFMDPNLRDEYPLDLAYSMAEIAKRCVARDLNSRPNVSEVFMVLSKIQSSTLDWDPSSRSASQVSDS* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0579 642 Pfam LysM domain 187 229 IPR018392 -
Psa2g0579 642 Gene3D LysM domain 172 238 IPR036779 -
Psa2g0579 642 CDD LysM 185 222 IPR018392 -
Psa2g0579 642 ProSiteProfiles Protein kinase domain profile. 300 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g0579 642 Pfam Protein kinase domain 370 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g0579 642 Gene3D Phosphorylase Kinase; domain 1 309 413 - -
Psa2g0579 642 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 9 637 - -
Psa2g0579 642 SUPERFAMILY Protein kinase-like (PK-like) 329 616 IPR011009 -
Psa2g0579 642 Gene3D Transferase(Phosphotransferase) domain 1 414 636 - -
Psa2g0579 642 ProSiteProfiles LysM domain profile. 184 228 IPR018392 -
Psa2g0579 642 PANTHER PROTEIN LYK5 9 637 - -
Psa2g0579 642 SMART LysM_2 185 229 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0579 Psa-Chr2 28963192 28966172 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0579 5 632 Receptor kinase-like Gene Family AT2G33580 52.308 0.0 601
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Psa2g0579 Pkinase 8.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0579 - - gmx:100818534 775.393