Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0565 ATGTTTATCTATGTCAGGTACTTCGAAAAGAAGGAAGAAAAGAAAACTATACAGCAAGAAACTTCTATGGCTCTTTCAACTCGAAATGGATGTGAAACTTCGGGATCCAGTGGGCACGCAACTAGTCTTACAGGAGTTATGATGGAAAAGTCAAGAGAGTTTTCATATCAAGAACTAGCAAAGGCTACAAATAACTTCAGCTTGGATAGTAAAATTGGTCAAGGTGGATTTGGCACGGTCTATTACGCAGAACTTAGAGGGAAGAAAACTGCAATAAAAAAGATGAAGGTCCAAGCAACAAGAGAATTTCTTGCTGAACTCAAAGTCTTAACAAGTGTTCATCACTGGAACCTGGTACAGTTGATTGGATATTGTGTTGAGGGATTTCTATTTCTTGTATATGAATACATGGACAACGGAAACTTAAGCCAACATCTACATAATTCAGAGAGAGAACCGATGACGTTGCCTATGAGGATGCAAATTGCTCTCGATGTGGCGAGAGGCCTTGAGTATATTCATGATCATTCAGTTCCTGTATATATCCACCGCGACATAAAATCGGACAATATTTTGTTAAATGAAAACTTCACTGGGAAGATTGCAGATTTTGGACTAACCAAGCTTACTGATGTTGCAAGTTCAACAGATAACACTATTCATGTGGCAGGCACATTCGGTTACATGCCCCCGGAAAATGCATATGGACGTATTTCTCGCAAGATAGATGTATATGCTTTTGGAGTTGTTCTTTATCAACTAATTTCTGCTAAAACAGCTGTGATCAAGATCGATAAACCTAGTACCGAGTTCGAAAGTCTTGAGATTAAGACTAATGAGTCTGTTGATGAATACAAGAGCCTTGTAACTTTGTTTGATGAAGTTATTGATGGAGAGGGAGATTGTATAGAAGGTCTAAGAAAGCTGGTGGATCCAAGGCTAGGAGATAACTATTCTATTGATTCTATAAGCAAGATGACACAGCTTGCGAAGGATTGCACAAATCGAGATCCGAAAGGACGTCCAAGAATGAGAGTTGTTGTGGTTTCACTTATGAAATTAAATTCTAGTATTGATGAGGGAAATATGAGAGGTAGTGAAGCATTGAGTCCCATTGTGGAGCATGATGATAAAAATTGA 1140 0.3851 MFIYVRYFEKKEEKKTIQQETSMALSTRNGCETSGSSGHATSLTGVMMEKSREFSYQELAKATNNFSLDSKIGQGGFGTVYYAELRGKKTAIKKMKVQATREFLAELKVLTSVHHWNLVQLIGYCVEGFLFLVYEYMDNGNLSQHLHNSEREPMTLPMRMQIALDVARGLEYIHDHSVPVYIHRDIKSDNILLNENFTGKIADFGLTKLTDVASSTDNTIHVAGTFGYMPPENAYGRISRKIDVYAFGVVLYQLISAKTAVIKIDKPSTEFESLEIKTNESVDEYKSLVTLFDEVIDGEGDCIEGLRKLVDPRLGDNYSIDSISKMTQLAKDCTNRDPKGRPRMRVVVVSLMKLNSSIDEGNMRGSEALSPIVEHDDKN* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0565 379 PANTHER LYSM DOMAIN RECEPTOR-LIKE KINASE 3 2 363 - -
Psa2g0565 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Psa2g0565 379 PIRSF ILK 10 289 - -
Psa2g0565 379 PIRSF ILK 299 365 - -
Psa2g0565 379 Gene3D Phosphorylase Kinase; domain 1 45 136 - -
Psa2g0565 379 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 2 363 IPR044812 GO:0019199|GO:0045087
Psa2g0565 379 SMART serkin_6 66 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g0565 379 ProSitePatterns Protein kinases ATP-binding region signature. 72 94 IPR017441 GO:0005524
Psa2g0565 379 SUPERFAMILY Protein kinase-like (PK-like) 44 351 IPR011009 -
Psa2g0565 379 ProSiteProfiles Protein kinase domain profile. 66 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g0565 379 Gene3D Transferase(Phosphotransferase) domain 1 137 370 - -
Psa2g0565 379 Pfam Protein tyrosine and serine/threonine kinase 67 263 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0565 Psa-Chr2 26059569 26061520 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0565 1 370 Receptor kinase-like Gene Family AT3G21630 54.068 2.85e-132 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Psa2g0565 PK_Tyr_Ser-Thr 8.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0565 - K13429 mtr:MTR_5g086080 547.354