Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0560 ATGTCAAATGTTTATGGAGTGGTAGGTCAATTCGAAATCTATGCTGGATTAAATTCATTGACAACAGTTCTGCAAGAGCATGGAACTTTAGGATACATTCATCATAGAGGAATAGATCAGAACAGCACAAATCTTAACAGCTTGAAAGCTTTATCCTACAAACACTTCATACAACCAATAATGGAAGGAAGTCAATTCGAAATCTATGCTGGATTAAATTCATTGACAACAGTTCTGCAAGAGCATGGAACTTTAGGATACATTCATCATAGAGGAATAGATCAGAACAGCACAAATCTTAACAGCTTGAAAGCTTTATCCTACAAACACTTCATACAACCAATAATGGAAGGAATTACTCTTCGCAATTCAAGAGGCCAATGTTGGATCGTGAACTCCGTTCCAGATGCTAATGGGAGAACAATTCACACCTTTTGTGGAGGATGGATGGCTTTTGTTCGTGGTAATAGTATAAAGGTTGGAGATGTCTGCATTTTCGAACTTATACGTGAGTGTGAATTACGTGTTCGCATTGCTGAGATTGGAAAAGATGGGTTAGACTGCCAAGTTGGAAAACTAGCTTTTAGTATGCTTAGGGCAAGACATGATGTCGCTTGCAGAAAGACTGCCAAATATATGTCAAAAAGCCCTAAAGTCAGCCCAAAGTCGAGAAACAAAGTTGATCTATCAGATAAAAGGTTGTCAAAGATGGGTCAAGAAACTGTTTTATCCGGTAGAGCTTCAAATACTTCGAAGATCGGGGCTAAAGCTGGTTTGAGAATGTTGTTTGCACTTGACGAACAAAGAGTGGCTGAAGCTTTTACTTCCGACTTTCCTAATTTTGTGAAAATCATGAAGATGTTCAATGTCAGCGGATCATACACTTTGAAAATTCCATATCAGTTCTCTGCTGCACATCTTCCTGCCGACAACAACCGCTACAGCTTCAACATTGCTGATTGCCGATACCCTGCAAATTCACACAGGAAGATTAAACAATCTGCTGAGCAACTCTGA 1017 0.3923 MSNVYGVVGQFEIYAGLNSLTTVLQEHGTLGYIHHRGIDQNSTNLNSLKALSYKHFIQPIMEGSQFEIYAGLNSLTTVLQEHGTLGYIHHRGIDQNSTNLNSLKALSYKHFIQPIMEGITLRNSRGQCWIVNSVPDANGRTIHTFCGGWMAFVRGNSIKVGDVCIFELIRECELRVRIAEIGKDGLDCQVGKLAFSMLRARHDVACRKTAKYMSKSPKVSPKSRNKVDLSDKRLSKMGQETVLSGRASNTSKIGAKAGLRMLFALDEQRVAEAFTSDFPNFVKIMKMFNVSGSYTLKIPYQFSAAHLPADNNRYSFNIADCRYPANSHRKIKQSAEQL* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0560 338 Pfam B3 DNA binding domain 117 178 IPR003340 GO:0003677
Psa2g0560 338 PANTHER B3 DOMAIN-CONTAINING 255 309 - -
Psa2g0560 338 PANTHER B3 DOMAIN-CONTAINING 119 242 - -
Psa2g0560 338 SUPERFAMILY DNA-binding pseudobarrel domain 112 179 IPR015300 -
Psa2g0560 338 CDD B3_DNA 109 178 IPR003340 GO:0003677
Psa2g0560 338 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 255 309 - -
Psa2g0560 338 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 119 242 - -
Psa2g0560 338 ProSiteProfiles B3 DNA-binding domain profile. 119 182 IPR003340 GO:0003677
Psa2g0560 338 Gene3D - 93 181 IPR015300 -
Psa2g0560 338 Gene3D - 266 334 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0560 Psa-Chr2 25931706 25933984 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa2g0560 B3 2e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0560 - - gmx:100814386 246.514