Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0549 ATGAGAGAACAAGATAATTCCGATCATCACAGTAGTGCAGAATTCATCATGAAAGATCACCATCATCACCGTTCATCTTCTTCTTCACTCTCCGGAAAAAAGAGAAAAGAAACCGAATCTTCTTCATCAGGTATCAACAACAACAACGATAGCACTCCTCGTGCTTGTACCGAATGCGGCAAGAAATTCTGGTCATGGAAAGCTCTTTTTGGTCACATGCGTTGCCATCCTGAACGTCAATGGCGAGGCATCAATCCTCCTCCGAATTTCCGACGACATCAACAGCAACAACAACCGCATACTCACAGTCACAGTCCTTCTCAGTTTTCAATCATGACGCAGGAAGATCACGAAGTTGCTGCTTGTTTGCTTTTACTTGCAAATTCAAATTCGAAGACGAACAACAACAGCATCAACAAAACCGCTAAGCTTAAGGCGGTTGCGGGAGTTACTACGGGGGCTACTACTGTGGATGATTCATCGTCGGTTATGGATCAAGAGATTAACAATAGTAATACTCATTTTGTGTGTTCGTGTTGTAACAAGGTGTTTGGATCGCATCAGGCTCTTGGAGGACACAGAGCGAGTCACAAGAATGTCAAGGGCTGTTTCGCCAATACAACTTCTTCACCACCAACAACAGTACCCGCTTCCACTAGTAAGATGATGACGTGGACACAACAAACTCAAGGCGGAGGAGAAGATCATGCTTTTATCGATGGCGGTGGTGGTGCTGGTGCTGATCATCATGATGATGAATATAACCACCACTCCAAGATGAATTTGATGATTGTACCTCGTGACGGTTACAATGCTGACGTGGAAGGGGAAACGGTTAATGAAATTAGTGGAGGAGGAGGACATAAGTGTGGAATATGTTTGAGGGTATTTACAACTGGACAAGCACTTGGTGGACATAAGAGGTGTCATTTTGATTCATCTAATTCTAATTCTGTTACAGCAACAACTTCTAACAAATCATCATCTCTTAATGTTGATCTGAATTTCCCTTTTCCTCCTCTCCCTCCTCCACCACCTTCTCCTCCCGATGATGATGATTCTTCACCTCTTACTCTTGATTTGAAGAATTTTGTTATAGATGTACTTTCTTTGGCTCTTCAAGGAATTTTTCGTGGTTTTAAGGATACCAAAACTCCTGTTATATGTCTAGGCATTGGTAATCTTTCAGCGGTCTTTTTATTTCCCTTACTTATGTATGCACGTGTCTTCCAAGAACGGTATATCTTCAATTCATCTTCTCGGGCACATTCATTCCATTTGTCTGCTGAGTTTAGAGGCTCTGCATCATATGGTAAGGGCCTTGGAGGAGAACGGTACATGTCCGATAGAGAATTATCAAGTGAGGTTGCAAATGTCATGGATGTGTTCCTTGAAGAGATGAAGAAATTGAAAGTGCTTCGCCTCTTCGGAATATTGATGCACACGGCTTTTGATTCCAATCCATGCTCATGGCTTGGCGTTCAATGCGACCATAACAACCATGTGGTTTCCCTTAACCTCACTGCTCATGGTAATTTTGGTCAACTTGGACCACAAATTGGAAACCTTTATCACTTGCATACCCTTTTGTTGTTGGATAATGGTTTCTCAGGAAAAGTGCCTTCAGAGTTAAGCAATTGTACTTTGCTTGAGAATTTAGACCTTTCTGGGAACAAATTCATTGGAAATATACCATATAGTTTGAATAAGTTGCAAAATTTACGGTTTATGAGTTTGTCTTCCAATCTGCTGACTGGTGAAATTCCAGATTCCGTGTTCGAAATTCAATCTCTAGAAGAAGTGAATCTGCACAATAACCTTCTTACTGGTCCTATCCCAACAAAAGTTGGAAACTTGACTCAACTGTTGAGATTGTATCTATATGATAATCAATTGTCAGGGAATATTCCTTCATCCGTTGGTAATTGCAGTAAATTACAGGACCTTGAATTGTCTTTCAATCGTTTGAGAGGCGAAATTCCGGTAAGTGTTTGGAGAATTCAAAGTCTTGTGCACATCTTGATTCACAACAACAGTCTCTCCGGGGAACTACCTATCGAGATGACAAATCTCAAGTATCTAAAAAACATCTCTTTGTTTGATAATCAGTTCTTAGGAATCATACCTCAAAGCTTGGGAATCAACAACAGCTTAGTGAAGTTGGACTGCATGAATAACAAATTCAGTGGTAATATCCCACCCAATCTTTGCTTTGGAAACAATTTGTTATTCCTCAACATGGGAATCAATCAACTTCAAGGTGGCATACCCTCTGATCTAGGAAGATGTGAAACTCTGAGGAGGTTATTTCTCAATGAAAATAATCTCACCGGGTCTCTTCCTGATTTTGAAAGTAATCTGAACTTGAATTACATGGACATGAGCAACAACAATATGAGTGGACCGGTTCCATCAAGTTTGGGAAATTGCGTAAATGTCACATACATTAATTTTTCATGGAACAAGTTTGGAGGGTTCATACCATCAGATCTTGGTAGACTTGTGAATCTTGTGGTTTTGGATCTTTCTCACAACAACTTGGAAGGTTCATTGCCTTCTCAACTGTCAAATTGTACTAAAATGGATCATTTTGATGTAGGGAGGTATCCCACAGTTTTTGGCAGAACTTATAAACATTCGCGAGTTACAACTTGGTGGAAATTTGTTTGGTGGAAAGATTCCTCGATGGAGGGGGAGATTGCGCAATTTGTTCTATGGATTAAATATGAGTGCTAA 2736 0.4046 MREQDNSDHHSSAEFIMKDHHHHRSSSSSLSGKKRKETESSSSGINNNNDSTPRACTECGKKFWSWKALFGHMRCHPERQWRGINPPPNFRRHQQQQQPHTHSHSPSQFSIMTQEDHEVAACLLLLANSNSKTNNNSINKTAKLKAVAGVTTGATTVDDSSSVMDQEINNSNTHFVCSCCNKVFGSHQALGGHRASHKNVKGCFANTTSSPPTTVPASTSKMMTWTQQTQGGGEDHAFIDGGGGAGADHHDDEYNHHSKMNLMIVPRDGYNADVEGETVNEISGGGGHKCGICLRVFTTGQALGGHKRCHFDSSNSNSVTATTSNKSSSLNVDLNFPFPPLPPPPPSPPDDDDSSPLTLDLKNFVIDVLSLALQGIFRGFKDTKTPVICLGIGNLSAVFLFPLLMYARVFQERYIFNSSSRAHSFHLSAEFRGSASYGKGLGGERYMSDRELSSEVANVMDVFLEEMKKLKVLRLFGILMHTAFDSNPCSWLGVQCDHNNHVVSLNLTAHGNFGQLGPQIGNLYHLHTLLLLDNGFSGKVPSELSNCTLLENLDLSGNKFIGNIPYSLNKLQNLRFMSLSSNLLTGEIPDSVFEIQSLEEVNLHNNLLTGPIPTKVGNLTQLLRLYLYDNQLSGNIPSSVGNCSKLQDLELSFNRLRGEIPVSVWRIQSLVHILIHNNSLSGELPIEMTNLKYLKNISLFDNQFLGIIPQSLGINNSLVKLDCMNNKFSGNIPPNLCFGNNLLFLNMGINQLQGGIPSDLGRCETLRRLFLNENNLTGSLPDFESNLNLNYMDMSNNNMSGPVPSSLGNCVNVTYINFSWNKFGGFIPSDLGRLVNLVVLDLSHNNLEGSLPSQLSNCTKMDHFDVGRYPTVFGRTYKHSRVTTWWKFVWWKDSSMEGEIAQFVLWIKYEC* 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0549 911 MobiDBLite consensus disorder prediction 1 40 - -
Psa2g0549 911 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 481 904 - -
Psa2g0549 911 PANTHER OS08G0446200 PROTEIN 481 904 - -
Psa2g0549 911 MobiDBLite consensus disorder prediction 1 52 - -
Psa2g0549 911 ProSitePatterns Zinc finger C2H2 type domain signature. 290 310 IPR013087 -
Psa2g0549 911 SUPERFAMILY L domain-like 663 868 - -
Psa2g0549 911 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 81 IPR013087 -
Psa2g0549 911 SUPERFAMILY L domain-like 484 736 - -
Psa2g0549 911 ProSiteProfiles Leucine-rich repeat profile. 836 859 IPR001611 GO:0005515
Psa2g0549 911 SMART c2h2final6 288 310 IPR013087 -
Psa2g0549 911 SMART c2h2final6 175 197 IPR013087 -
Psa2g0549 911 SMART c2h2final6 54 76 IPR013087 -
Psa2g0549 911 ProSitePatterns Zinc finger C2H2 type domain signature. 177 197 IPR013087 -
Psa2g0549 911 ProSiteProfiles Zinc finger C2H2 type domain profile. 288 315 IPR013087 -
Psa2g0549 911 Pfam C2H2-type zinc finger 56 78 - -
Psa2g0549 911 Pfam C2H2-type zinc finger 288 310 - -
Psa2g0549 911 Pfam C2H2-type zinc finger 174 198 - -
Psa2g0549 911 SUPERFAMILY beta-beta-alpha zinc fingers 52 79 IPR036236 -
Psa2g0549 911 ProSiteProfiles Zinc finger C2H2 type domain profile. 175 202 IPR013087 -
Psa2g0549 911 Gene3D Ribonuclease Inhibitor 617 879 IPR032675 -
Psa2g0549 911 SMART LRR_typ_2 834 858 IPR003591 -
Psa2g0549 911 SMART LRR_typ_2 619 643 IPR003591 -
Psa2g0549 911 SMART LRR_typ_2 571 595 IPR003591 -
Psa2g0549 911 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Psa2g0549 911 Gene3D Ribonuclease Inhibitor 477 616 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0549 Psa-Chr2 25193334 25202095 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0549 501 868 Receptor kinase-like Gene Family AT1G73080 30.623 4.97e-44 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa2g0549 zf-C2H2_6 2e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0549 - - mtr:MTR_5g087360 590.112