Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0527 ATGGGTTCACAAGAAAATGAAGAATGTTTGCCCCCTCCACCTCCCATTGTTCCATCTGATGTTGAGCCAGTCAAGATAGAGCAAGAACTGGTTAAGAAGAAGGGTCCTACTAGGGTTCCTATGGCTAGGCGTGGACTGGGGTCAAAGGGAAGTAGGCTGCCTTTGCTGACCAATCACTTTAAAGTGAATGTTTCCAACACTGATGGATACTTCTTCCAGTACAGTGTTGCTCTATTTTATGAAGATGGACGTCCTGTTGAGGGGAAGGGCTCTGGAAGGAAGATACTGGACCGAGTTCAAGAAACTTATAATTCTGAGCTGAACGGGAAAGACCTTGCATACGATGGTGAAAAAACATTGTTCACTATTGGTTCTCTAGCTCAGAACAAGCTTGAGTTTACTGTTGTTCTTGATGATGTAACATCAAGCAGGAATAATGGTAACCGGAGCCCTGAAGCGAATGGAAGTCCTAATGATGCCGATAGGAAGAGGGTCCGAAAATCTTTCCGTTCCAAGACATATAAAGTTGAAATCAGCTTTGCCTCCAAAATTCCTCTGCAGGCTATTGCCAATGCCTTAAGGGGCAATGAGACGGAGAATTATCAAGAAGCCATTAGGGTGCTTGATATTATACTGAGGCAACATGCTGCCAAACAAGGCTGTCTTCTTGTTCGCCAAAATTTCTTCCACAACGATGTTAACAATTTCACTGATGTGGGAGGTGGTGTACTTGGGGTCCGAGGGCTGCATTCCAGCTTTAGAACAACTCAAAGTGGACTTTCTCTGAACATAGATGTGTCCACAACTATGATTGTCCGTCCCGGGCCTGTTGTTGACTTTTTGATTGCAAATCAAAATGCGAGGGATCCTTTCACTCTTGACTGGGCTAAGTCCAAAAGGACTCTTAAAAATTTGAGGATCAAAACCAGACCTACAAATCAAGAGTACAAGATTACCGGGCTGAGTGACTTACCTTGCAGGGAACAAATGTTCACTCTGAAGAAGAAAGGGGGCGGTGAAGATGAGTCAGAGGAGATCACTGTTTATGATTATTTCGTAAACCGACGGAATATTACTCTGCAGTACTCTGCTGACCTTCCGTGTATTAATGTTGGGAAGCCCAAACGACCTACTTATGTCCCAATTGAGCTTTGTGAATTGGTTTCCCTTCAACGGTACACAAAAGCCCTGTCCACTCTCCAACGGTCTTCTCTTGTTGAGAAGTCGAGGCAGAAGCCTCAAGAACGGATGAAGGTTTTGTCTGATGCGCTGAGAACCAGTAACTATGGTTCTGAACCCATGCTAAGGGACTGTGGCATTTCTATAACTTCTGGGTTCACACAAGTGGATGGGAGAGTTTTGCAGGCACCAAGGCTGAAGTTTGGAAATGGGGAAGATTTCAATCCCAGAAACGGGAGATGGAATTTCAATAACAAGAAAATTGTACAACCAGCCAAAATAACGAAGTGGGCTGTGGTTAACTTTTCTGCTCGTTGTGATGTGCAAGGACTTGTGAGGGATCTGATTAAGTGCGGAAGAATGAAAGGAATTCAAGTTGAACCTCCTTTTGATGTATGTGAAGAGCAAAACACCTTTAGGCGTTCCCCACCTGTTGTACGTGTTGAGAAAATGTTTGAGATCATTCAGTCTAAACTTCCCGAGCCTCCTCTCTTTCTCCTCTGTCTTCTTCCTGAAAGGAAGAACTCTGAACTTTATGGTCCATGGAAGAAGAAGAATCTTGCCGAGTTTGGAATTATAACTCAGTGCATAGCACCCTCTAGGGTAAACGACCAGTACCTGACCAATGTTTTACTGAAGATCAATGCGAAGCTTGGTGGGATGAATTCTCTGTTAGGGGTTGAACATTCTCCATCCATCCCAATTGTATCTAAAGCACCTACTCTAATTTTGGGCATGGATGTTTCTCATGGTTCACCTGGTCAATCTGACATTCCATCTATTGCCGCGGTCGTGAGCTCGAGACAATGGCCTCTAATATCTAAATATAGGGCATGTGTCCGAACTCAGGGATCTAAGGTTGAAATGATTGACAATTTGTTCAAGCCAGTGCCTGATAAGAAGGAGGATGAAGGAATTATAAGGGAACTACTGATTGATTTCTATACAAGTTCTGGGAACAGAAAACCGGACAATATTATCATTTTCAGGGATGGTGTCAGTGAGTCTCAGTTCAACCAAGTCCTGAATATTGAACTCAGCCAAATCATTGAGGCATGTAAATTTCTTGATGATACTTGGAACCCCAAGTTTACTGTTATTGTTGCTCAAAAGAATCATCACACAAAATTCTTCCAACCTGGAGCTCCAGACAATGTGCCGGCTGGGACTGTTGTGGACAACAAAATTTGTCATCCTAGGAATTATGATTTCTATATGTGTGCTCATGCAGGAATGATAGGAACCAGCAGGCCAACACATTATCATGTTCTGTTGGATGAGATTGGCTTTTCTCCCGATGATCTACAAGAGCTTGTGCACTCTCTCTCCTATGTTTATCAGAGAAGCACCACTGCCATATCTGTTGTTGCTCCAATCTGCTATGCTCACTTGGCTGCTTCACAAGTTGGACAGTTCATGAAGTTTGAGGATAGATCCGAAACAGCATCCGTTCCCGGTGCAAACGGTTCTCCTGTTCCACAGCTTCCAAAGTTACGAGAGAATGTCTGCAATTCCATGTTTTTTGTTTGA 2709 0.4356 MGSQENEECLPPPPPIVPSDVEPVKIEQELVKKKGPTRVPMARRGLGSKGSRLPLLTNHFKVNVSNTDGYFFQYSVALFYEDGRPVEGKGSGRKILDRVQETYNSELNGKDLAYDGEKTLFTIGSLAQNKLEFTVVLDDVTSSRNNGNRSPEANGSPNDADRKRVRKSFRSKTYKVEISFASKIPLQAIANALRGNETENYQEAIRVLDIILRQHAAKQGCLLVRQNFFHNDVNNFTDVGGGVLGVRGLHSSFRTTQSGLSLNIDVSTTMIVRPGPVVDFLIANQNARDPFTLDWAKSKRTLKNLRIKTRPTNQEYKITGLSDLPCREQMFTLKKKGGGEDESEEITVYDYFVNRRNITLQYSADLPCINVGKPKRPTYVPIELCELVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLSDALRTSNYGSEPMLRDCGISITSGFTQVDGRVLQAPRLKFGNGEDFNPRNGRWNFNNKKIVQPAKITKWAVVNFSARCDVQGLVRDLIKCGRMKGIQVEPPFDVCEEQNTFRRSPPVVRVEKMFEIIQSKLPEPPLFLLCLLPERKNSELYGPWKKKNLAEFGIITQCIAPSRVNDQYLTNVLLKINAKLGGMNSLLGVEHSPSIPIVSKAPTLILGMDVSHGSPGQSDIPSIAAVVSSRQWPLISKYRACVRTQGSKVEMIDNLFKPVPDKKEDEGIIRELLIDFYTSSGNRKPDNIIIFRDGVSESQFNQVLNIELSQIIEACKFLDDTWNPKFTVIVAQKNHHTKFFQPGAPDNVPAGTVVDNKICHPRNYDFYMCAHAGMIGTSRPTHYHVLLDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGQFMKFEDRSETASVPGANGSPVPQLPKLRENVCNSMFFV* 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0527 902 ProSiteProfiles PAZ domain profile. 299 389 IPR003100 GO:0005515
Psa2g0527 902 MobiDBLite consensus disorder prediction 1 20 - -
Psa2g0527 902 SMART Piwi_a_2 558 867 IPR003165 GO:0003676
Psa2g0527 902 Gene3D - 453 619 - -
Psa2g0527 902 SMART DUF1785_2 222 274 IPR014811 -
Psa2g0527 902 Pfam Mid domain of argonaute 468 526 IPR032473 -
Psa2g0527 902 Pfam Piwi domain 559 867 IPR003165 GO:0003676
Psa2g0527 902 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 6 901 - -
Psa2g0527 902 SUPERFAMILY Ribonuclease H-like 542 865 IPR012337 -
Psa2g0527 902 Pfam PAZ domain 278 405 IPR003100 GO:0005515
Psa2g0527 902 MobiDBLite consensus disorder prediction 142 165 - -
Psa2g0527 902 Pfam Argonaute linker 2 domain 415 461 IPR032472 -
Psa2g0527 902 Gene3D paz domain 268 393 - -
Psa2g0527 902 CDD PAZ_argonaute_like 274 388 - -
Psa2g0527 902 Gene3D - 625 902 IPR036397 GO:0003676
Psa2g0527 902 ProSiteProfiles Piwi domain profile. 558 867 IPR003165 GO:0003676
Psa2g0527 902 SUPERFAMILY PAZ domain 269 429 IPR036085 GO:0005515
Psa2g0527 902 CDD Piwi_ago-like 433 859 IPR045246 -
Psa2g0527 902 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 6 901 - -
Psa2g0527 902 Pfam N-terminal domain of argonaute 53 212 IPR032474 -
Psa2g0527 902 Pfam Argonaute linker 1 domain 224 272 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0527 Psa-Chr2 24454673 24462293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0527 43 901 Eukaryotic Initiation Factors Gene Family AT5G43810 34.967 3.78e-158 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0527 K11593 - gmx:100779439 1500.34