Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0504 ATGGCCAAAAAACGAAAGCTTCGATCTTCCGACCCCGAACCCACCAAGCCACTCGAAACCGAACCAAAGCCAGAAGCAGCCGAAGCACAACCCGAACCAACTACAGACCAAGAACCAAGCCATGAAAACATGGCCGTCGATGAAGAAATTGCACCGGTAGAAGAAGATCAACCTCAAAACGAAGAACAAGTAGGTGAAGGCGAAGCAGAAGGAGAAGAACAAGAACAAGTAGAAGAAGATGAAGACGAAGAGCAACAAGGAGAAGACGAAACCCTAGAAAACCGAAACCAACAACAAGACGCCGCGGAAGTTTCAAATCCAACCGCCGTTGAGCAGGCTGAGACCGTCGAAGCTAACGGTGCTGAGGAAACTAACAACGATGAAGAAGAGGAAGATCTTGATTTGGAAGACGAACCTGTTGAGAAGCTTCTAGAGCCTTTCACGAAGGAGCAATTACACGCTCTCGTGAAGCAAGCTATTGAGAAGTATCCAGATCTGTCGGAGAATGTTCGTCAGCTGGCTGATGTGGACCCTGCTCACAGGAAAATTTTCGTCCATGGACTTGGATGGGATGCAACCGCCGAAACCCTAACCAGTGTGTTTCAGAAATACGGTGAAATTGAAGACTGTAAGGCGGTTACTGATAAGTTATCTGGAAAATCAAAGGGGTATGCTTTTATTTTGTTTAAGCATAGGAGTGGTTGTCGCAGGGCGTTGAAGCAGCCTCAGAAGCAGATTGGTAACAGAACAACATCTTGTCAGTTGGCCTCTGCTGGACCTGTTCCGGCACCTCCACCGAATGGTCCTCCGGTATCAGAGTATACCCAGAGGAAGATTTTTGTAAGCAATGTGAGTTCTGATATTGATCCTCAGAAATTGCTTGAGTTTTTCAAACAGTTTGGGGAAGTTGAAGACGGTCCTTTGGGTCTTGATAAGAATACTGGAAGGCCAAAGGGATTTGCTCTGTTTGTGTACAAGTCTGTTGAGAGTTCTAAGAAGGCCTTGGAAGAGCCAAATAAGATTTTTGAGGGTCACACTTTGTATTGTCAGAAGGCTGTTGATGGTCCTAAGGGATACAAGGGTCATTATCAGCAGCCTCAACATCATCATCATCAACAGCATCATTCCCACCATCACCATCACCAGCCTCACTACAATTCAAGGAAAGAGAAGAACAAGTATTCCTCTGGTGGTGGGCCATCACACGGTGGTGGCGGTGGTCACTTGATGGCACCTCCTGGGCCTGTTGCGGGTTACAATCCTGGAGTCCCGGCTCAAGGATTGAATCCAGCACTTGGTCAGGCTTTATCAGCTTTGCTTGCTAATCAAGGAGCTGGATTGGGGCTTGGAAATTTGCTAGGAGGTCTTGGTGGTGCTCCTGTGAACCAAGCTGGGCCACCTCCTGCTGCGTATGCTAACCAGGCTGCTATGGGATATGGAAACCAGCCGGGGTTGCAACCACAGTACCAGAATCCTCAGTTGGGGCAGAGTGGTGGTGCTAGACCTCATCCTGGTCCAGGTGGTGCTCCTTACATGGGTCACTAG 1545 0.4835 MAKKRKLRSSDPEPTKPLETEPKPEAAEAQPEPTTDQEPSHENMAVDEEIAPVEEDQPQNEEQVGEGEAEGEEQEQVEEDEDEEQQGEDETLENRNQQQDAAEVSNPTAVEQAETVEANGAEETNNDEEEEDLDLEDEPVEKLLEPFTKEQLHALVKQAIEKYPDLSENVRQLADVDPAHRKIFVHGLGWDATAETLTSVFQKYGEIEDCKAVTDKLSGKSKGYAFILFKHRSGCRRALKQPQKQIGNRTTSCQLASAGPVPAPPPNGPPVSEYTQRKIFVSNVSSDIDPQKLLEFFKQFGEVEDGPLGLDKNTGRPKGFALFVYKSVESSKKALEEPNKIFEGHTLYCQKAVDGPKGYKGHYQQPQHHHHQQHHSHHHHHQPHYNSRKEKNKYSSGGGPSHGGGGGHLMAPPGPVAGYNPGVPAQGLNPALGQALSALLANQGAGLGLGNLLGGLGGAPVNQAGPPPAAYANQAAMGYGNQPGLQPQYQNPQLGQSGGARPHPGPGGAPYMGH* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0504 514 MobiDBLite consensus disorder prediction 1 136 - -
Psa2g0504 514 SUPERFAMILY RNA-binding domain, RBD 170 264 IPR035979 GO:0003676
Psa2g0504 514 Coils Coil 118 138 - -
Psa2g0504 514 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 500 - -
Psa2g0504 514 Gene3D - 267 408 IPR012677 -
Psa2g0504 514 MobiDBLite consensus disorder prediction 363 387 - -
Psa2g0504 514 MobiDBLite consensus disorder prediction 121 136 - -
Psa2g0504 514 SMART rrm1_1 182 254 IPR000504 GO:0003723
Psa2g0504 514 SMART rrm1_1 278 350 IPR000504 GO:0003723
Psa2g0504 514 Gene3D - 173 259 IPR012677 -
Psa2g0504 514 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 258 IPR000504 GO:0003723
Psa2g0504 514 MobiDBLite consensus disorder prediction 49 89 - -
Psa2g0504 514 MobiDBLite consensus disorder prediction 359 402 - -
Psa2g0504 514 MobiDBLite consensus disorder prediction 1 26 - -
Psa2g0504 514 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 279 347 IPR000504 GO:0003723
Psa2g0504 514 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 250 IPR000504 GO:0003723
Psa2g0504 514 MobiDBLite consensus disorder prediction 494 514 - -
Psa2g0504 514 CDD RRM_RBM24_RBM38_like 277 352 - -
Psa2g0504 514 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 277 354 IPR000504 GO:0003723
Psa2g0504 514 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 500 - -
Psa2g0504 514 SUPERFAMILY RNA-binding domain, RBD 261 371 IPR035979 GO:0003676
Psa2g0504 514 MobiDBLite consensus disorder prediction 97 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0504 Psa-Chr2 22858101 22862852 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0504 273 356 C2H2 Transcription Factor Family AT2G19380 30.952 2.34e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0504 K12741 - gmx:100792637 554.673