Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0490 ATGGCTTTCACACTAGAGAGATGTGAAGATAACAACATGATGTTCACTATGGATTCTCAGAAAACAGTACCTGCTCCATTCTTAACAAAAACATACCAACTTGTTGATGATCCTCTCACCGACCACATTGTCTCTTGGAGTGAAGATGAATCTACATTTGTTGTTTGGAGACCTCCTGAGTTTGCTAGAGATCTTCTTCCCAATTTTTTCAAACACAACAACTTCTCAAGCTTTGTTAGGCAACTAAATACCTATGGTTTCAAGAAGGTGGTTGCAGATAGATGGGAATTTGCAAATGAATACTTCAAAAAAGGAGAAAAACATCTACTATGTGAAATCCACAGAAGAAAAACATCTCAAAACTACCAACAACAATACTATGAACAATCACCTCAAATCCTCCAACAAGATGAAACCATCTGTTGGATTGATAACACTCCATTAGCACAACAATCTCCTAAACCAACCACTGATATCCTAACAGCACTTTCCGAGGACAATCAAAGACTAAGAAGAAAGAACCTAATGCTATTATCAGAACTCACTCACATGAAGAATCTCTACAATGACATCATATATTTCATTCAAAACCATGTGACTCCTGCAACATCCTTTGAACAAAGAAGCAACAACAATAGTGCTGCTATGTTGAAGCTTGTTGAGTTGGATTCATCGGTATCTCAATTACCAAATGATGGTAATGTTGTTAAGGATTGTAATGGTTCTTATGTGAAGCTCTTTGGTGTTCCTCTTTGTGGAAAAAAGAGATTGCATCCATGA 780 0.3692 MAFTLERCEDNNMMFTMDSQKTVPAPFLTKTYQLVDDPLTDHIVSWSEDESTFVVWRPPEFARDLLPNFFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFKKGEKHLLCEIHRRKTSQNYQQQYYEQSPQILQQDETICWIDNTPLAQQSPKPTTDILTALSEDNQRLRRKNLMLLSELTHMKNLYNDIIYFIQNHVTPATSFEQRSNNNSAAMLKLVELDSSVSQLPNDGNVVKDCNGSYVKLFGVPLCGKKRLHP* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0490 259 PRINTS Heat shock factor (HSF) domain signature 27 50 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa2g0490 259 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa2g0490 259 PRINTS Heat shock factor (HSF) domain signature 78 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa2g0490 259 Pfam HSF-type DNA-binding 27 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa2g0490 259 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 255 IPR027725 -
Psa2g0490 259 ProSitePatterns HSF-type DNA-binding domain signature. 66 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa2g0490 259 Gene3D - 19 118 IPR036388 -
Psa2g0490 259 SMART hsfneu3 23 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa2g0490 259 SUPERFAMILY "Winged helix" DNA-binding domain 24 116 IPR036390 -
Psa2g0490 259 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-4D 14 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0490 Psa-Chr2 21852596 21854738 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0490 21 213 HSF AT1G46264 60.550 2.68e-89 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Psa2g0490 HSF_DNA-bind 3.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0490 K09419 - gmx:100527682 377.481