Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0477 ATGGTCGGAGACAAAAGAGTTTATATGATCTCTCAACCTACCACCACCACCAACACTAACAACAATTTAATGTTGTCAACATCATCACCCGCACAACCCACTTTCAATAGGTGTATTGATCTTTTGCAAGAAGCAAGGGATGATGTTATGACGTCCTCCAAAAGGCCTAGGGGTAGACCCTCAGGCTCTAAAAATAAACCTAAACCACCTATCATTGTCAAAGAAAACTCAGAGACTCTCATGGAAATGCTTTCCATTGAGATCCCTGCTGGAAAAGATATTGTGGAGTATCTCATCAACTTGGCTCGACATCATCAATCTAGCTTAACAGTGGTGAGGGCTTATGGCCCTGTCATTGATGTTACACTTCTCAACCTGGTGTCACATACCCCTTTTTTCCCCATTGGAGGACCGTTCCGTATGATATCTCTATCTGGAACATACATAAATCCCAACTGTGGTCATGTTCCTCCCCGATTCGTCACCGATCCATCATTTTCGTCTTTTTCCATTTACCTTTCTGGAGGTCATGGGCAAGTGTTTGGTGGAGTTCTTGGAGGGAAGGTAAAATCTGCTGGTGTTGTTTTGATTACAGCCACTCTTTTCAAGAAGCCTGTGTTTCACAAGATGGTCACCATAAATGGAACTATTCAAGATATTGAAGATGATGATCCAATATATGGTGATCGTGTCCTCATAAATGGTGAGCGTGTTGCACCAGAATCTAACAACATTAATGTTCTTAATGTTCGAGGCTTTGGTTTTATGGGTTCTGATCTAACTTATGCAATCAATCATCAAACAATTTCTTCCCGTCTTCCTATTGATATGAATGTCATGCAGTGGAACCATTCCACTTGGGTTAATAACTATTAG 876 0.4121 MVGDKRVYMISQPTTTTNTNNNLMLSTSSPAQPTFNRCIDLLQEARDDVMTSSKRPRGRPSGSKNKPKPPIIVKENSETLMEMLSIEIPAGKDIVEYLINLARHHQSSLTVVRAYGPVIDVTLLNLVSHTPFFPIGGPFRMISLSGTYINPNCGHVPPRFVTDPSFSSFSIYLSGGHGQVFGGVLGGKVKSAGVVLITATLFKKPVFHKMVTINGTIQDIEDDDPIYGDRVLINGERVAPESNNINVLNVRGFGFMGSDLTYAINHQTISSRLPIDMNVMQWNHSTWVNNY* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0477 291 Pfam Plants and Prokaryotes Conserved (PCC) domain 85 203 IPR005175 -
Psa2g0477 291 SUPERFAMILY AF0104/ALDC/Ptd012-like 81 210 - -
Psa2g0477 291 ProSiteProfiles PPC domain profile profile. 78 224 IPR005175 -
Psa2g0477 291 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 12 285 IPR014476 GO:0003680
Psa2g0477 291 Gene3D - 81 220 - -
Psa2g0477 291 MobiDBLite consensus disorder prediction 46 71 - -
Psa2g0477 291 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 12 285 - -
Psa2g0477 291 CDD DUF296 86 201 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0477 Psa-Chr2 21114411 21115286 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0477 47 210 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 35.882 6.43e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0477 - - cam:101509190 239.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g0477 2 21114411 21115286 Psa2g0477 2 21114411 21115286 ECH