Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0465 ATGGAAGAAACGAGTGAGTTGCAACCGGAAGAAAATAAAGTCTCGATGGAGAAAAGTACGAAAAGAAAGCTCAAAACGCCTGCGCAGCTTAAGGGTCTGGAGAATTTTTATACTGAGCACAAATATCCGACGGAGGAGTTGAAATTAGTAATTGCTGAGGAGTTAGGGTTGACGGAAAAGCAAGTATCTGGGTGGTTTTGCCATCGAAGGTTAAAAGATAAGAGATTGTCGAAAGATGACGGAGCTGCTAATGGACGACAAGATCGTTCAAGCGGTGTCATCCAGGATCGTGGTAGTGGACTCGGGCAAGGGCAAGATTCATGTGGAAGCAGTAAACATGGTGATTATAGGTATCTGGATCCTAAAGAAGTTGAGAGTCATGGTCTCTACAATCGTGATTTGTCGGTTGCTGATATGACCTATGGACGTAGGAATCATTTTTCTGAAAACGTTAGTGGAATGGACGATACGTCGTCTGAGAGTAGCTCTTATTTGCAAGAACGGTTGTATCCTCAAGGCCAGGGTCCGTATGAGACAGAGCCTTCTAGATATCTAGCATCTGGTAAATCACTTCCACCCTTAAAGCCGAAGGGTGCGATGAACATGGGATATAAACCATCGGGATATTTGAAAGTGAAGGGTGAGATAGAGCATGCTGCTATAACTGCTGTTAAGAAGCAATTAGGAAGGAATTATCTGGAAGACGGTCCGCTACTTGGCGTGGAATTTGATCCACTTCCTCCCGGGGCCTTTGAATGCCAAACCCAAGATCCAGTTCCCGAACCGTACCGTTTTGGTGATCCGGCTCTTCTCAAATCTCCCGAAATCTCCACAGCAAAAAGACGACCCAGTCTTGGCTCCAGATACGATTCATATTATACTAAACATAGTTCTAAAGATACTCATATGGAAGGAGATGATGACTTTGGTTCCTTGCGTGATTCGGATGTTCATGATAAACAGGATAAGGAACCTTTCCATGGTACAAAACACCGACAAGCTTTTCAGAGTAACGCCAATCGTGTTCCTGCTAGGAACTCTCCCTTGGATTTGTATGAAGACTCTACCGGGGAAGCTGCATATAATAATATCACCAAGAATCATAGGAAAGACACCAAGCGCGGTGTCGAGGGTATGAGATCTGATTCTGCTTCTAACCATAGTGATCCCTATGAAGAAAACATTCCAGTTAAGCATGCAGACTTTCTGCCATACGGCTATGAAAACACCAATCCGAAGAATGTGCAAAGGAGTGTTCACGCAGAGTTTTTGCCATATGACTATGATAACGTCAACCCAAAGAATGCGCAAAGGAGTGAACACGTAAAAACAAAACATTCAAACTCAATCCGTAATTCTCGTGGATCTGCGGATACTGAAGAAAGAGAGCTATCTACTAGGATGACTAAGGAAGAGATGTTCAAGGCGGACAGGAAGGCAAAAAAGCAGTTTCGCGATACGGGTGGAGCAGCGATGCTTTCAAATGAAACTATGGTTGCAAAACGACTCAAACCCAACACGTTTCTACCATACAACGGGAATCAATTTCCTGCTGCTGAAATAGAACCAATGAAAAATCCGAGGTCTGGCGCAGAGATGCCGTCTAGCTTTAGCGAGGACGAAACCGGCGATACAAGTTCCTCGATGAATTGA 1653 0.4422 MEETSELQPEENKVSMEKSTKRKLKTPAQLKGLENFYTEHKYPTEELKLVIAEELGLTEKQVSGWFCHRRLKDKRLSKDDGAANGRQDRSSGVIQDRGSGLGQGQDSCGSSKHGDYRYLDPKEVESHGLYNRDLSVADMTYGRRNHFSENVSGMDDTSSESSSYLQERLYPQGQGPYETEPSRYLASGKSLPPLKPKGAMNMGYKPSGYLKVKGEIEHAAITAVKKQLGRNYLEDGPLLGVEFDPLPPGAFECQTQDPVPEPYRFGDPALLKSPEISTAKRRPSLGSRYDSYYTKHSSKDTHMEGDDDFGSLRDSDVHDKQDKEPFHGTKHRQAFQSNANRVPARNSPLDLYEDSTGEAAYNNITKNHRKDTKRGVEGMRSDSASNHSDPYEENIPVKHADFLPYGYENTNPKNVQRSVHAEFLPYDYDNVNPKNAQRSEHVKTKHSNSIRNSRGSADTEERELSTRMTKEEMFKADRKAKKQFRDTGGAAMLSNETMVAKRLKPNTFLPYNGNQFPAAEIEPMKNPRSGAEMPSSFSEDETGDTSSSMN* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0465 550 MobiDBLite consensus disorder prediction 531 550 - -
Psa2g0465 550 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Psa2g0465 550 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 549 - -
Psa2g0465 550 SMART HOX_1 18 80 IPR001356 GO:0003677
Psa2g0465 550 MobiDBLite consensus disorder prediction 7 28 - -
Psa2g0465 550 CDD homeodomain 21 75 IPR001356 GO:0003677
Psa2g0465 550 MobiDBLite consensus disorder prediction 520 550 - -
Psa2g0465 550 MobiDBLite consensus disorder prediction 366 380 - -
Psa2g0465 550 MobiDBLite consensus disorder prediction 76 122 - -
Psa2g0465 550 MobiDBLite consensus disorder prediction 434 466 - -
Psa2g0465 550 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 549 - -
Psa2g0465 550 SUPERFAMILY Homeodomain-like 15 78 IPR009057 -
Psa2g0465 550 MobiDBLite consensus disorder prediction 88 110 - -
Psa2g0465 550 MobiDBLite consensus disorder prediction 366 389 - -
Psa2g0465 550 MobiDBLite consensus disorder prediction 267 287 - -
Psa2g0465 550 MobiDBLite consensus disorder prediction 320 341 - -
Psa2g0465 550 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Psa2g0465 550 MobiDBLite consensus disorder prediction 1 29 - -
Psa2g0465 550 Gene3D - 10 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0465 Psa-Chr2 19824341 19827834 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0465 3 550 Homeobox Transcription Factor Family AT4G03250 38.929 2.51e-79 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Psa2g0465 Homeodomain 6.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0465 - - gmx:100803515 722.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g0465 2 19824341 19827834 Psa2g0465 2 19824341 19827834 ECH