Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0460 ATGGCTTTCTTTAGGAACTTCGTAAATGATACAGTCTCACACAGTGTCATGGAAGATAAAGGCCTAGGACAGGATGCTAGTAATATTCTTAGACCAGTAGGTAATGAGTGTCCTGATGCAACTTCTAGTGAGAAAGAATTTGATATGAACTTGGAGGCACAATATGAGAGTGATGGTGGACCAGATGGTGCCTGTAGACTGCAAAATGAGGGAACCGCTAATGATGGAGATGCTCTGAGAGAATCCAACTTACAGGCTGTTGGTAGTAAAGCATCTACGGCCGGAAGGTGGGGTTCGACATTTTGGAAGGACTGCCAACCAATGTTTCCTCAAAATGGCTTGGATTCTGGAAAGGAATCAAAAAGTGGATCAGACTATAGAAATGCAGGGGGATCCGAAGAAAATTCTTTGGATGGAGAAACAGGAAGGGTAGACTCAGAAGATGATGATGGACAAAAAGACGCAGGTAAAGGCCGAAGAAGTCACTCTGATGTTCCTGCAGAAGAGATGTTGTCTGATGAATATTATGAGCAGGATGGGGAAGATCAAAGTGACTCGTTGCATTATAATGGGATTCACAAGCCCACTGGACGAAATTCACAGCCTCATCTGATGTCTAATTCCGTGAAAAGAACAGTGCGCAGGAAATCTAGGATTTCAGATGATGATGGTGATGGTGATGTTGACTATGAAGAAGAGGATGAAGTAGATGAAGATGATCCTGATGATGCAGATTTTGAGCCTGCCGAGAATATCCATACCTTAAACAAGGATAAAAATTGGGAAGGTGTAGGATCTGATGAAAATGATGACAGTGATGAAAGTCTAGATGTCTCTGATGATGACGAATCTTTCTATACCAAAAAACCCAAGGGAAGGCAACAAGGTAAAGTTAGAAAAAGTATAAAATCTACCAGAGATCGCAAATCAGGTGTTGCATCTGGCAGACAAAGAAGATTGAAATCATCTTTTGAAGACAATGAGTCAACAACAGAGGATTCTGACAGTGATAGTGATGAAGATTTCAAAAGCACACGAAAGAGAAGTTTCAATGTCCGCAAGAATAACAGCCGCTTTTCAGTAACAAGTTTTTCTACACACAACAGTGACGTCCGCACTTCTCGTAGGGCGGTTAGGAAGATATCATATGTTGAAAGTGATGAAAGTGAAGAAGTTGATGAAGGGAAGAAGAAAAAGTCTCAAAAGGAAGAAATTGAAGAGGACGATGGTGACTCTATTGAAAAGGTGCTTTGGCATCAGCTGAAGGGAACATCTGAAGATGCTCAAATGAATAATAGATCATCTGAGCCTGTTTTAACGAGTCACTTGTTTGATTCTGAATTTGATTGGAATGAGATGGAATTTTTAATAAAATGGAAGGGGCAGTCTCATTTGCACTGTCAATGGAAGTCTTTTGTAGAGCTACAAAATCTCAGTGGCTTTAAAAAGGTTTTGAATTATACAAAGAAAATAATGGAGGACATCAGGTACCGGAAGACAATCTCAAGGGAGGAGATTGAGGTCTATGATGTGAGTAAGGAGATGGATTTAGAAATTATCAGGCAGAACAGTCAGGTGGAAAGAATCATTGCAGATAGGATAAATAAAGATAATTCTGGCAATGTTATCCCCGAATACCTGGTCAAGTGGCAAGGACTATCTTATGCTGAAGTGACTTGGGAAAAGGATACCGATATCTCTTTTGCTCAACATTCAATTGATGAATATAGGGTTCGAGAGGCTGCAATGTCTGTTCAAGGGAAGGTGGTGGATTCCCAGCGTAAGAAGAGCAAAGCAAGTTTGCGGAAGCTTGAGGAACAACCTGAATGGTTAAAGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGCTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGTCTTGGAAAAACTGTTCAGTCAGTGTCAATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGCCCTTTTCTTGTCGTTGTGCCGTTGTCTACTTTATCAAACTGGGCCAAAGAATTTAGGAAGTGGCTTCCTGATATGAATATTATTGTATATGTTGGTACTCGAGCAAGTCGAGAGGTTTGTCAACAGTATGAATTTTATGATGACAAAAAGCCCGGTAAACCAATAAAGTTCAATGCACTGTTGACTACATATGAAGTGATTTTGAAAGATAAGGCCGTTCTCTCCAAGATCAAATGGAATTATTTGATGGTAGATGAAGCTCATAGACTAAAAAATAGCGAGGCACAGTTGTACACTTCCCTTCTAGAATTTAGCACCAAGAATAAGTTGCTCATCACTGGTACTCCGCTACAAAACAGTGTTGAAGAGCTATGGGCTTTGCTCCACTTCCTTGATCCTAACAAGTTCAAGAGCAAGGATGAGTTTGTTCAAAACTATAAGAATTTGAGTTCTTTCCATGAGAATGAGCTTGCAAATCTTCATATGGAATTGAGGCCACACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCTTTACCCCCCAAAATTGAGCGCATTCTTAGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAATGGATTTTGGAACGTAACTTTCAAAATTTAAACAAAGGAGTTCGTGGGAATCAGGTTACATCTCTATCATGTATTTCTAGTGATCATTTGTACATGGATACTCTGTGCTTTCTTCACAATGATGGTTAA 2730 0.3982 MAFFRNFVNDTVSHSVMEDKGLGQDASNILRPVGNECPDATSSEKEFDMNLEAQYESDGGPDGACRLQNEGTANDGDALRESNLQAVGSKASTAGRWGSTFWKDCQPMFPQNGLDSGKESKSGSDYRNAGGSEENSLDGETGRVDSEDDDGQKDAGKGRRSHSDVPAEEMLSDEYYEQDGEDQSDSLHYNGIHKPTGRNSQPHLMSNSVKRTVRRKSRISDDDGDGDVDYEEEDEVDEDDPDDADFEPAENIHTLNKDKNWEGVGSDENDDSDESLDVSDDDESFYTKKPKGRQQGKVRKSIKSTRDRKSGVASGRQRRLKSSFEDNESTTEDSDSDSDEDFKSTRKRSFNVRKNNSRFSVTSFSTHNSDVRTSRRAVRKISYVESDESEEVDEGKKKKSQKEEIEEDDGDSIEKVLWHQLKGTSEDAQMNNRSSEPVLTSHLFDSEFDWNEMEFLIKWKGQSHLHCQWKSFVELQNLSGFKKVLNYTKKIMEDIRYRKTISREEIEVYDVSKEMDLEIIRQNSQVERIIADRINKDNSGNVIPEYLVKWQGLSYAEVTWEKDTDISFAQHSIDEYRVREAAMSVQGKVVDSQRKKSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVCQQYEFYDDKKPGKPIKFNALLTTYEVILKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTSLLEFSTKNKLLITGTPLQNSVEELWALLHFLDPNKFKSKDEFVQNYKNLSSFHENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFQNLNKGVRGNQVTSLSCISSDHLYMDTLCFLHNDG* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0460 909 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 837 IPR027417 -
Psa2g0460 909 CDD CD1_tandem 409 489 - -
Psa2g0460 909 Gene3D - 526 578 - -
Psa2g0460 909 MobiDBLite consensus disorder prediction 110 349 - -
Psa2g0460 909 Gene3D - 607 846 IPR038718 -
Psa2g0460 909 CDD CD2_tandem 522 577 - -
Psa2g0460 909 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 112 889 - -
Psa2g0460 909 MobiDBLite consensus disorder prediction 113 135 - -
Psa2g0460 909 Pfam SNF2-related domain 635 888 IPR000330 GO:0005524|GO:0140658
Psa2g0460 909 ProSiteProfiles Chromo and chromo shadow domain profile. 524 588 IPR000953 -
Psa2g0460 909 MobiDBLite consensus disorder prediction 224 246 - -
Psa2g0460 909 SUPERFAMILY Chromo domain-like 408 491 IPR016197 -
Psa2g0460 909 MobiDBLite consensus disorder prediction 247 266 - -
Psa2g0460 909 SMART ultradead3 612 808 IPR014001 -
Psa2g0460 909 ProSiteProfiles Chromo and chromo shadow domain profile. 411 499 IPR000953 -
Psa2g0460 909 MobiDBLite consensus disorder prediction 189 208 - -
Psa2g0460 909 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 112 889 - -
Psa2g0460 909 Gene3D - 397 523 - -
Psa2g0460 909 MobiDBLite consensus disorder prediction 382 410 - -
Psa2g0460 909 SMART chromo_7 522 581 IPR000953 -
Psa2g0460 909 SMART chromo_7 409 492 IPR000953 -
Psa2g0460 909 MobiDBLite consensus disorder prediction 305 328 - -
Psa2g0460 909 SUPERFAMILY Chromo domain-like 503 577 IPR016197 -
Psa2g0460 909 Gene3D - 847 876 IPR027417 -
Psa2g0460 909 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 628 800 IPR014001 -
Psa2g0460 909 MobiDBLite consensus disorder prediction 138 169 - -
Psa2g0460 909 Pfam Chromo (CHRromatin Organisation MOdifier) domain 525 577 IPR023780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0460 Psa-Chr2 19512369 19527152 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0460 638 886 RAD5 or RAD16-like Gene Family AT5G43530 27.273 3.36e-17 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa2g0460 SNF2_N 2.2e-61 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0460 K11367 - gmx:100792398 1418.29