LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa2g0459	ATGGCTATGGTGGGGACTCTGGTGGAAGTGACAGTAATAAACTTGAGAGATGTTTCTCTTCTAAATATTGTGGTGGAATTGAAGAAGTGTTGCAACCATCCCTTCCTATTTGAAAGTGCTGACCATGGCTATGGTGGGGACTCTGGTGGAAGTGACAGTAATAAACTTGAGAGAATTGTTTTTAGCAGTGGCAAGCTTGTGATACTTGATAAGCTGCTTGTTAGATTGCATGAAACCAAGCACCGTGTTCTGATTTTCTCTCAGATGGTTAGGATGTTGGATATATTGGCGCAGTATTTGTCACTTCGAGGGTTTCAATTTCAAAGACTTGATGGCAGTACAAAATCTGAGGTGCGACAGCAGGCAATGGAACATTTCAATGCACCTGGTAGTGATGATTTCTGCTTCCTTCTTTCAACACGAGCAGGAGGTCTAGGTATCAACCTTGCCACGGCAGACACTGTCATTATATTTGATTCAGACTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGATGTTGTTAACATATATAGATTTGTGACAAGCAAAAGTGTCGAAGAAGATATTCTGGAGCGTGCCAAGAAGAAGATGGTTCTGGACCACTTGGTGATTCAAAAACTGAATGCAGAAGGTAGATTGGAGAAGAAAGAAGCCAAAAAGGGAGGAAGTTATTTTGATAAAAACGAGCTGTCTGCAATCTTACGATTTGGAGCAGAAGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAAAGCAAGAAACGACTCTTAAGTATGAATATAGATGAGATTCTTGAAAGAGCTGAGAAGGTTGAAGAGAAGACGGATGAAGGAGAACAAGGAAGCGAGTTATTAAGTGCATTTAAGGTTGCCAATTTTTGCAATGGTGAAGATGATGCAAGTTTTTGGAGTCGTTGGATAAAGCCTGATGCTGTATTTCAAGCTGAGGAAGCTCTTGCTCCACGTTCTGCAAGAAATATTAAAAGCTATGCCGAGGCTGATCCATCTGAAAGGGGTAATAAAAGGAAAAAGAAGGAATTTGAACCACCTGAGCGAGTTCAGAAACGCCGTAAAGCAGAGTATTCCGCTCCTGCAGTACCAATGGTTGATGGAGCCTCTGTCCAAGTTAGAAGTTGGTCATATGGGAATTTATCTAAAAGAGACGCACTCCGTTTTTCTCGCGCCGTCATGAAATTCGGGAATGAGAACCAAATTGATTTAATTGCGGCCGACGTTGGTGGTGCAGTTGTGGCAGCTCCTCCTGAAGCACAGATAGAACTTTTCAATGCACTAATTGATGGTTGTTCAGAAGCAGCGGAAATTGAAAATCTGGACCCAAAGGGGCCTGTGCTAGATTATTTTGGTGTCCCAGTGAAAGCAAATGATATACTTACTCGTGTCCAAGAACTTCAACTCCTAGCAAAGCGCATTAGCCGGTATGAAGATCCCATTGCACAATTTCGCGTTTTATCGTATCTCAAACCTTCAAACTGGTCCAAAGGTTGTGGGTGGAATCAAATTGATGATGCAAGATTGCTTCTTGGAATACATTACCATGGATTTGGTAATTGGGAAATGATTAGATTAGATGAAAGGCTTGGCCTTACGAAAAAAATAGCACCTGTAGAACTCCAAAACCATGAAACTTTCTTGCCACGAGCTCCAAATTTGAGAGACCGTGCTAATGCCCTTCTGGAACAAGAACTTGTTGTTCTTGGGGTAAAAAATGTTAATAGCAAAGTTGCTCGGAAGCCTTCCAAGAAAGAGAAAGAACAGACAATGAATATCTCACTGTTGCGCGGACAGGAGAAGAAGAAAAAACCGGGTTCTGTTAATGTCCAAATGAGAAAGGATAGGTTTCGGAAACCCAAAAAGGCCGAACCTATTTTAAAAGAGGAAGGTGAAATGTCCGATAATGAGGAAGTATATGAGCAGTTTAAAGATGTAAAATGGATGGAATGGTGTCAAGATGTGATGGTTGAAGAAACGAAAACTTTGGAACGTCTTAAGAGATTGCAGAGAACTAGTGCTGATCTTCCAAAGGAAAAGGTTCTTTCAAAAATACGTCACTATTTACAACTTCTTGGGCGAAGGATTGATCAAATTGTGTTAGAAAATGAAGTGGAACCCTATAAGCAAGATAGAATGACTGTCCGACTGTGGAAATATGTATCCACCTTTTCCCATCTTTCAGGGGAGAGGCTTCATCAAATATATTCCAAACTTAAACAGGAACAGAATGACGAGGCTGGGGTTGGTCCTTCTGTTTCATTTAGCAGAAACGGAAACCCGTTCCATCGCCACATGGAGAGGCAAAGAGGATTAAAAAATACAGCTAGCTACCAAATGTCAGAACCCGATAATAATACAGGAAAATCTGAGGCATGGAAACGGAGAAGAAGATCTGAAAGTGATGATCATTTCCAAGGTCAGCCTCCACCTCAAAGAACCACAAGCAATGGGATCCGGATTACGGATCCTAAATCACTCGGGATCCTTGGTGCTGGACCTTCTGACAAACGCTTTGTTAGTGGGAAACCTTTGAAGACACAACCTGGTGGGGTTCCTTCAAGTCAAGGTTTTTCCTCAGGAATAAAATAA	2625	0.4156	MAMVGTLVEVTVINLRDVSLLNIVVELKKCCNHPFLFESADHGYGGDSGGSDSNKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAQYLSLRGFQFQRLDGSTKSEVRQQAMEHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQDVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLSMNIDEILERAEKVEEKTDEGEQGSELLSAFKVANFCNGEDDASFWSRWIKPDAVFQAEEALAPRSARNIKSYAEADPSERGNKRKKKEFEPPERVQKRRKAEYSAPAVPMVDGASVQVRSWSYGNLSKRDALRFSRAVMKFGNENQIDLIAADVGGAVVAAPPEAQIELFNALIDGCSEAAEIENLDPKGPVLDYFGVPVKANDILTRVQELQLLAKRISRYEDPIAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWEMIRLDERLGLTKKIAPVELQNHETFLPRAPNLRDRANALLEQELVVLGVKNVNSKVARKPSKKEKEQTMNISLLRGQEKKKKPGSVNVQMRKDRFRKPKKAEPILKEEGEMSDNEEVYEQFKDVKWMEWCQDVMVEETKTLERLKRLQRTSADLPKEKVLSKIRHYLQLLGRRIDQIVLENEVEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLKQEQNDEAGVGPSVSFSRNGNPFHRHMERQRGLKNTASYQMSEPDNNTGKSEAWKRRRRSESDDHFQGQPPPQRTTSNGIRITDPKSLGILGAGPSDKRFVSGKPLKTQPGGVPSSQGFSSGIK*	875

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa2g0459	874	Coils	Coil	262	282	-	-
	Psa2g0459	874	Pfam	Helicase conserved C-terminal domain	65	178	IPR001650	-
	Psa2g0459	874	Gene3D	-	475	579	-	-
	Psa2g0459	874	PANTHER	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED	17	806	-	-
	Psa2g0459	874	MobiDBLite	consensus disorder prediction	334	367	-	-
	Psa2g0459	874	MobiDBLite	consensus disorder prediction	799	815	-	-
	Psa2g0459	874	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	19	254	IPR027417	-
	Psa2g0459	874	SMART	DUF4208_2	645	750	IPR025260	-
	Psa2g0459	874	CDD	SF2_C_SNF	55	189	-	-
	Psa2g0459	874	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	68	219	IPR001650	-
	Psa2g0459	874	MobiDBLite	consensus disorder prediction	339	367	-	-
	Psa2g0459	874	Coils	Coil	208	228	-	-
	Psa2g0459	874	SMART	helicmild6	94	178	IPR001650	-
	Psa2g0459	874	MobiDBLite	consensus disorder prediction	785	874	-	-
	Psa2g0459	874	MobiDBLite	consensus disorder prediction	816	833	-	-
	Psa2g0459	874	Pfam	Domain of unknown function (DUF4208)	658	749	IPR025260	-
	Psa2g0459	874	Gene3D	-	7	290	IPR027417	-
	Psa2g0459	874	PANTHER	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1	17	806	-	-
	Psa2g0459	874	MobiDBLite	consensus disorder prediction	859	874	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa2g0459	Psa-Chr2	19503612	19511717	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa2g0459	63	224	RAD5 or RAD16-like Gene Family	AT5G22750	35.366	1.29e-20	95.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa2g0459	K11367		-	gmx:100792398	1504.96