Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0426 ATGGGAGGTGTGGACGATGAGGAACCAGCTTTGAAACGTATGAAGATTTCCTTGAACGGAATAGTTGGCTTGTCTAACGGATCATCTTCTGTAGAGCCTGTTGGAGGAGGGTTGTCTAGTGACTCTATGGCTCGGACACTTCCGTCTAAAGAGGACGAACAAGTTGTCGGTTCCAAAGGGGTTATAAAGAGAGACGAGTTTGTTAGAATAATTGCGAAGGCGTTGTATTCTCTTGGGTACAGAAAGAGTGGAGAGCGTCTTGAAGAGGAGTCTGGTATAGCTTTGCATTCACCTGGGGTGAATCTGTTTACGCAACATGTGCTTGATGGGAATTGGGATGAGAGTGTAGCGACATTGCGGAAAATTGGTCTGACGGATGAAACTGTTGTTAGATCGGCGTCGTGTTTGATATTGGAACAGAAGTTCTTTGAATTTCTTAACAGGGAGAAGGTTATGGAAGCATTGAAGACCTTGAGGGAGGAGATTACTCCACTTTGCAGTTATAGTAGTAGAATTCGGGAACTTTCTTCCTGCATGGTGTCTCCTAAGCAAGATGTTGTGAAAGTGAGATCTAGGTCAAAACTTCTGGAGGAGTTGCAGAAACTGCTTCCTCCAACAGTGATGATACCCGAAAAAAGGTTGGAACATCTGGTTGAACAGGCCCTTATCTTGCAGCAAGAGGCTTGCCCATTTCACAACTCAATGGATATGATGTCATTATATTCTGATCATCATTGTGGAAAAGATCTGATACCGTCTAGAACAGTACAGATATTAGAAAAACATGATGGTGAAGTCTGGTTTGTACAATTTTCACATAATGGAAAATATTTAGCTTCAGCATCAAATGATCAAACTACAATCATCTGGGAGGTTGGCGTAAATGGGCTGTCTATAAAGCATAGATTATCTGGTCACCAGAAACCCATTCATTCTGTTTCATGGAGTCCTAATGATGAAGAGCTACTCACATGTGGAGTGGAGGAATGTGTTAGGCGTTGGGATGTCTCTACTGGTAAGTGTCTCCAAATTTATGAAAAAGCTGGTGCTGGCCTAGTCTCCTGTACATGGTTTCCAGGTGGGAAACATATACTTTCTAGCTTAAGTGATAAGAGCATTTGCATGTGGGAATTAGATGGGAAAGAAGTGGAGTCTTGGAAAGGACAGAAATCCCTTAAGATTTCTGATTTGGATATAACGGATGACGGAGAAGTGATTCTAAGTATTTGTAAACCCAATACAGTACTGTTGTTCAATAGAGAAACAAAGGTTGAAAGATTTATTGAAGAAAATCAGACATTAACTTCTTTTTCTTTATCAAAGGATAACAAATTCTTGCTGGTTGATCTTTTGAACCAAGAAATACATCTATGGAATATTGAAGGTGATGCTAAGTTCGTTGGCATGTACAAAGGTCATCAGCGCGCTAGGTATATTATTAGGTCTTGCTTTGGTGGACTTAAGCAAGCTTTCATTGCTAGTGGTAGTGAGGATTCACAGGTTTACATATGGCACAGAAGCTCAGGAGAACCAATAGAGACATTGCCCGGTCATTCGGGATCTGTTAATAGTGTGAGCTGGAATCCAGCCAATCCCCACATGTTAGCCTCTGCCAGTGATGACCGGACAATTCGGATATGGGGCCTTAACAGTCTGAATAAAAAGTACCAAAATGGACACAGCAATGGCATCCATTACTGCAATGGAGGAACTTAG 1716 0.4167 MGGVDDEEPALKRMKISLNGIVGLSNGSSSVEPVGGGLSSDSMARTLPSKEDEQVVGSKGVIKRDEFVRIIAKALYSLGYRKSGERLEEESGIALHSPGVNLFTQHVLDGNWDESVATLRKIGLTDETVVRSASCLILEQKFFEFLNREKVMEALKTLREEITPLCSYSSRIRELSSCMVSPKQDVVKVRSRSKLLEELQKLLPPTVMIPEKRLEHLVEQALILQQEACPFHNSMDMMSLYSDHHCGKDLIPSRTVQILEKHDGEVWFVQFSHNGKYLASASNDQTTIIWEVGVNGLSIKHRLSGHQKPIHSVSWSPNDEELLTCGVEECVRRWDVSTGKCLQIYEKAGAGLVSCTWFPGGKHILSSLSDKSICMWELDGKEVESWKGQKSLKISDLDITDDGEVILSICKPNTVLLFNRETKVERFIEENQTLTSFSLSKDNKFLLVDLLNQEIHLWNIEGDAKFVGMYKGHQRARYIIRSCFGGLKQAFIASGSEDSQVYIWHRSSGEPIETLPGHSGSVNSVSWNPANPHMLASASDDRTIRIWGLNSLNKKYQNGHSNGIHYCNGGT* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0426 571 SMART WD40_4 338 377 IPR001680 GO:0005515
Psa2g0426 571 SMART WD40_4 463 505 IPR001680 GO:0005515
Psa2g0426 571 SMART WD40_4 508 548 IPR001680 GO:0005515
Psa2g0426 571 SMART WD40_4 296 335 IPR001680 GO:0005515
Psa2g0426 571 SMART WD40_4 252 291 IPR001680 GO:0005515
Psa2g0426 571 SMART WD40_4 379 419 IPR001680 GO:0005515
Psa2g0426 571 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 96 153 IPR006595 -
Psa2g0426 571 PRINTS G protein beta WD-40 repeat signature 278 292 IPR020472 -
Psa2g0426 571 PRINTS G protein beta WD-40 repeat signature 492 506 IPR020472 -
Psa2g0426 571 PRINTS G protein beta WD-40 repeat signature 535 549 IPR020472 -
Psa2g0426 571 ProSitePatterns Trp-Asp (WD) repeats signature. 278 292 IPR019775 -
Psa2g0426 571 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 303 340 - -
Psa2g0426 571 ProSiteProfiles LIS1 homology (LisH) motif profile. 63 95 IPR006594 GO:0005515
Psa2g0426 571 PANTHER FAMILY PROTEIN/WD-40 REPEAT PROTEIN, PUTATIVE-RELATED 1 568 - -
Psa2g0426 571 Pfam WD domain, G-beta repeat 509 547 IPR001680 GO:0005515
Psa2g0426 571 Pfam WD domain, G-beta repeat 467 504 IPR001680 GO:0005515
Psa2g0426 571 Pfam WD domain, G-beta repeat 301 335 IPR001680 GO:0005515
Psa2g0426 571 Pfam WD domain, G-beta repeat 339 376 IPR001680 GO:0005515
Psa2g0426 571 Pfam WD domain, G-beta repeat 255 290 IPR001680 GO:0005515
Psa2g0426 571 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 292 IPR001680 GO:0005515
Psa2g0426 571 Gene3D - 252 509 IPR015943 GO:0005515
Psa2g0426 571 SUPERFAMILY WD40 repeat-like 250 547 IPR036322 GO:0005515
Psa2g0426 571 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 292 - -
Psa2g0426 571 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 515 551 - -
Psa2g0426 571 Gene3D - 510 568 IPR015943 GO:0005515
Psa2g0426 571 ProSiteProfiles Trp-Asp (WD) repeats profile. 515 557 IPR001680 GO:0005515
Psa2g0426 571 CDD WD40 256 547 - -
Psa2g0426 571 PANTHER WD REPEAT PROTEIN 26-RELATED 1 568 - -
Psa2g0426 571 ProSiteProfiles Trp-Asp (WD) repeats profile. 491 514 IPR001680 GO:0005515
Psa2g0426 571 ProSiteProfiles Trp-Asp (WD) repeats profile. 303 344 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0426 Psa-Chr2 17918925 17923836 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0426 421 552 Miscellaneous Gene Families AT5G08390 26.316 2.39e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0426 K22382 - gmx:100780502 944.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g4215 5 337660006 337666975 Psa2g0426 2 17918925 17923836 PCT