Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0423 ATGATTACCGCTATTCTCCGAAGAGCTTCTTCAACACTCTCAAAGCGTGCCATCCCCGCCGCCGAGGCTCTCCTTTCCTCCACCGCTTCCGCCGAGCTCCGACAACTCACCGTCCTATCAGCCAGGTCCTTCCACTCTAAATCAGAACCCTTGCTATTTCGCGCCTCTTCGGGTTCTCGTGCTGGTTACGCCGCTGAAGCTTTTCCATTCGAAGAACCAGCGAAAGCGAACGGCGATGATGGTCTCGAGATCGCCAAGCTTGGGATTTCTCAGGATATTGTTTCTGCTTTGGAAAAGAAAGGAATCACTAAGCTTTTCCCCATTCAGAGGGCTGTGCTGGAGCCTGCTATGCAAGGTCGTGATATGATTGGTCGTGCTAGAACAGGAACTGGAAAAACTCTTGCTTTTGGGATACCAATCATTGATAAGATCATTCAGTTTAATGCTAAACATGGGCGAGGAAGGGATCCTCTGGCTTTGGTTTTGGCTCCGACTAGAGAACTTGCAAAGCAGGTTGAAAAGGAATTCTATGAGGCAGCGCCTACTTTGGATACTATCTGTGTTTATGGAGGTACGCCCATCTCTCAACAGATGAGGCAGCTTGATTATGGTGTTGATATAGCGGTTGGTACACCTGGAAGAATTATCGATCTTCTTAATAGAGGTGCTCTGAATTTGAAGGAAGTTCAGTTTGTTATTCTTGATGAGGCTGATCAGATGCTTCAAGTAGGCTTTCAGGAAGATGTGGAGAAGATCTTGGAGAGGTTGCCTGCAAAGAGACAAACTCTTATGTTCTCTGCAACCATGCCTACTTGGATAAAGCAGTTAACACGGAATTACCTAAAAGATCCCATAACTATTGATCTTGTTGGAGATTCCGATCAGAAGCTGGCAGATGGAATTTCACTCTTCGCAGTTGCATCTGATGCATACGTCAAAGCAGGAATTCTTGTTCCTCTAATAAAAGAACATGCAAAGGGAGGAAAGTGTATTGTTTTCACTCAAACAAAACGTGATGCCGATCGATTATCACATGGCATGTCAAAAAGTATTCCATGCGAGGCATTGCATGGAGATATATCACAAGCTCAGAGAGAAAAAACTCTTGCTGGATTCAGAAATGGTCATTTTAATGTCTTAGTGGCAACTGATGTTGCTTCACGTGGGCTTGATATACCTAATGTTGATCTTGTAATTCATTACGAGCTTCCCAATAATTCAGAGATATTTGTTCACCGATCTGGAAGAACAGGTCGTGCTGGTAAGAAAGGAACTGCTATTCTCATTTATTCAGAAGATCAATCCAGGACTCTTAGGACTATTGAGCGCGATGTAGGCTGTAAATTTAAAGAGTTACCAAAGATTGCTGTTGATAGTGGATCAGTGTCTGCATTTGGTAGCATGGGTGGTGGCCGATTTGGTTCATTTGGTGGAGGTTCGAGTAGCCAATTTGGTGGTGGAGGTTTTAGCCGCGGTAGCCGTTCTGGGGGCTACGGTAATTCAGGTGATAGGTTTTCTGGTTCAAGACCATCTGGAGGGGGGTTTTCAGGCAATTCATCCGGTGAAAATAGATATGGCGGATCAAGCTCTGGGCGTTTTGGCTCCTTTGGTTCAGGTGATTCAGGTAGTAGATCTGGTGGATCATCCAGTGGATTTAACTCTAGCCGGCAAGGTGGTTTTGGCGGATTCGGTGGTTCTGATCGCTCCAGTGGTTTTGGAAATTTTGGGTCGGGTAAATCTAGCGCATTTGGGGATCGTCGTGGCAGGGATTGA 1773 0.4552 MITAILRRASSTLSKRAIPAAEALLSSTASAELRQLTVLSARSFHSKSEPLLFRASSGSRAGYAAEAFPFEEPAKANGDDGLEIAKLGISQDIVSALEKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIIDKIIQFNAKHGRGRDPLALVLAPTRELAKQVEKEFYEAAPTLDTICVYGGTPISQQMRQLDYGVDIAVGTPGRIIDLLNRGALNLKEVQFVILDEADQMLQVGFQEDVEKILERLPAKRQTLMFSATMPTWIKQLTRNYLKDPITIDLVGDSDQKLADGISLFAVASDAYVKAGILVPLIKEHAKGGKCIVFTQTKRDADRLSHGMSKSIPCEALHGDISQAQREKTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHYELPNNSEIFVHRSGRTGRAGKKGTAILIYSEDQSRTLRTIERDVGCKFKELPKIAVDSGSVSAFGSMGGGRFGSFGGGSSSQFGGGGFSRGSRSGGYGNSGDRFSGSRPSGGGFSGNSSGENRYGGSSSGRFGSFGSGDSGSRSGGSSSGFNSSRQGGFGGFGGSDRSSGFGNFGSGKSSAFGDRRGRD* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0423 590 MobiDBLite consensus disorder prediction 493 560 - -
Psa2g0423 590 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 82 110 IPR014014 GO:0003724
Psa2g0423 590 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 442 IPR027417 -
Psa2g0423 590 MobiDBLite consensus disorder prediction 493 590 - -
Psa2g0423 590 Pfam Helicase conserved C-terminal domain 315 421 IPR001650 -
Psa2g0423 590 CDD SF2_C_DEAD 313 430 - -
Psa2g0423 590 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 34 514 - -
Psa2g0423 590 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 316 460 IPR001650 -
Psa2g0423 590 CDD DEADc 93 288 - -
Psa2g0423 590 SMART ultradead3 101 304 IPR014001 -
Psa2g0423 590 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 113 287 IPR014001 -
Psa2g0423 590 Pfam DEAD/DEAH box helicase 106 275 IPR011545 GO:0003676|GO:0005524
Psa2g0423 590 SMART helicmild6 341 421 IPR001650 -
Psa2g0423 590 Gene3D - 311 463 IPR027417 -
Psa2g0423 590 Gene3D - 83 291 IPR027417 -
Psa2g0423 590 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 53-LIKE 34 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0423 Psa-Chr2 17743526 17747934 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0423 80 458 Eukaryotic Initiation Factors Gene Family AT3G19760 33.850 5.30e-70 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0423 - - gmx:100778436 733.021