Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0410 ATGGATAATTCAAATGAAGCATCATCATCATTGAGTTTTGTATCATCACACTTATCAAATGGTTCAAGTAATACTCACAATGAACATGTGGCAAATATTGAAATTGTGAGTTTGAATAAGCTCAGTGGAAGCCTTGAGAAGCTATTGAGTGATGTTGTTGATTATGATTACTGTGATGCTGAGATTGTTGTTGAAGAGATTCCGGTCGGTATTCATAGATGTATACTGGCTTCTCGGAGTCAGTTTTTTCATCAACTCTTTAAGAAAGGAAAAGATGGAGATTCGAAGGAAGAAAAGCGAACCGGAAAGCCAAGTTATCAGATGAAAGATTTGGTGTGTTATGGTACTGTTGGATATGAAGCTTTTGTTGTTTTTTTGCATTATTTGTATACTGGAAAGTTAAAGGCTCCACCAATAGAAGTGATGACTTGTGTCGATGACGCTTGTATTCATGATTCGTGTCGTCCCGCTATCGATTACGCTTTGGAACTTATTTATGCTTCTTCCACATTTCAGATGAAAGAGCTTGTTTTGCTTTTTCAGAGATATCTTCTAAATTTTGTTGATAAGGCTCTTGTAGAAGATGTCATTCCTATTCTTGTTGCTGCCAATCATTGCCAACTAGACCAGCTTCTCTCTCATTGCATTCAGAGAGTAGCGAGGTCTGACATGGATAACATATATTTGGAAAGAGAACTTCCTCATGAAGTTATGACCGAAATCAAATCGCTCCGAGTCCAATCTCTTCCCGAATCATCGCCCAATGCGATGGAAGTCGAGCCCGTGATTGTAAACGATAAGAGTGTCAGGAAAATCCTTAAAGCATTGGACTCTGATGATGTTGAGTTACTAAAGCTTCTTTTAGACGAATCTAGTGTGACTCTCGATGAAGCCTATGCGCTACACTATGCTTGTGCTTATTGTGATTCTAAGGTTGTTCAAGAAGTTCTTACTTTAGGATTGGCGGATATTCTCCTTAAGAATCCGCGCGGATACACGGTTCTTCACGTGGCCGCGCGACGAAAGGATCCGTCTATTTTGTGTGCGCTATTGAAGAAAGGAGCTTGTGCATCAGAAACCACTCTTGATGGACAAAGTGCTCTTTCGATTTGTCAGAGATTGACGAGGCGGAAGGATTATAATGCGAAAACAGTGCAGTGTAAGGAGTCTCATAAAGACAGGCTTTGTGTCGATGTACTCGAGAGAGAAATGAGAAGAAATTCTATGTCGGTGGACATGTCAGTTTTGTCACAGTTAACTGCGGATGATTTGAATATGAGACTCGATTATCTCGAAAATAGAGTTGCATTTGCTAGGCTGTTCTTTCCGGCCGAGGCTAGGGTTGCCATAGAGAATGCGGAGGCCGATTCAACGCCACTCTACGCAACTTCACCGGCTCTAAAAGGCAATATAAAAGAAGTAGATCTAAATGAAACTCCTTCATTTAGAACAAGAAAACTCCAACTAAGATTACAATCGCTTGTAAAAACAGTTGAGAATGGTAGGCGTTTCTTTCCGCATTGTTCGGAGGTGCTTGATAAGTATCTAGAAGACGAGATGCCCGATGTTCATGTCCTAGAGAAGGGAACCGAGGAAGAGCAAAGAACGAAGAAAGCGCGGTTCATGGAACTTAGAGACGAGGTGCAGAAGGCATTTTATAAGGATATGGCTGAAAATAACCATTCAAATATTTCATCTTCATTGACTTCTACAACATCATCTTCAACAAGAAGGGAAAGTCTTAACCACAAAATGAGGAGAAAATGA 1767 0.4041 MDNSNEASSSLSFVSSHLSNGSSNTHNEHVANIEIVSLNKLSGSLEKLLSDVVDYDYCDAEIVVEEIPVGIHRCILASRSQFFHQLFKKGKDGDSKEEKRTGKPSYQMKDLVCYGTVGYEAFVVFLHYLYTGKLKAPPIEVMTCVDDACIHDSCRPAIDYALELIYASSTFQMKELVLLFQRYLLNFVDKALVEDVIPILVAANHCQLDQLLSHCIQRVARSDMDNIYLERELPHEVMTEIKSLRVQSLPESSPNAMEVEPVIVNDKSVRKILKALDSDDVELLKLLLDESSVTLDEAYALHYACAYCDSKVVQEVLTLGLADILLKNPRGYTVLHVAARRKDPSILCALLKKGACASETTLDGQSALSICQRLTRRKDYNAKTVQCKESHKDRLCVDVLEREMRRNSMSVDMSVLSQLTADDLNMRLDYLENRVAFARLFFPAEARVAIENAEADSTPLYATSPALKGNIKEVDLNETPSFRTRKLQLRLQSLVKTVENGRRFFPHCSEVLDKYLEDEMPDVHVLEKGTEEEQRTKKARFMELRDEVQKAFYKDMAENNHSNISSSLTSTTSSSTRRESLNHKMRRK* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0410 588 ProSiteProfiles Ankyrin repeat profile. 330 355 IPR002110 GO:0005515
Psa2g0410 588 CDD BTB_POZ_NPR_plant 39 188 - -
Psa2g0410 588 ProSiteProfiles BTB domain profile. 58 138 IPR000210 GO:0005515
Psa2g0410 588 Gene3D - 264 405 IPR036770 -
Psa2g0410 588 MobiDBLite consensus disorder prediction 555 588 - -
Psa2g0410 588 Pfam BTB/POZ domain 56 181 IPR000210 GO:0005515
Psa2g0410 588 ProSiteProfiles Ankyrin repeat region circular profile. 330 355 - -
Psa2g0410 588 Pfam Ankyrin repeats (3 copies) 278 355 IPR002110 GO:0005515
Psa2g0410 588 SMART ANK_2a 330 359 IPR002110 GO:0005515
Psa2g0410 588 SMART ANK_2a 296 326 IPR002110 GO:0005515
Psa2g0410 588 Pfam NPR1/NIM1 like defence protein C terminal 372 570 IPR021094 -
Psa2g0410 588 SMART BTB_4 58 188 IPR000210 GO:0005515
Psa2g0410 588 PANTHER REGULATORY PROTEIN NPR3 1 586 IPR044292 GO:0009862|GO:2000022|GO:2000031
Psa2g0410 588 Gene3D Potassium Channel Kv1.1; Chain A 21 220 IPR011333 -
Psa2g0410 588 SUPERFAMILY POZ domain 45 186 IPR011333 -
Psa2g0410 588 PANTHER REGULATORY PROTEIN, PUTATIVE-RELATED 1 586 - -
Psa2g0410 588 SUPERFAMILY Ankyrin repeat 272 373 IPR036770 -
Psa2g0410 588 MobiDBLite consensus disorder prediction 556 578 - -
Psa2g0410 588 Pfam Domain of unknown function (DUF3420) 223 272 IPR024228 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0410 Psa-Chr2 17151546 17154970 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Psa2g0410 NPR1_like_C 1.1e-79 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0410 K14508 - gmx:100814739 818.535