Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0405 ATGGATGTAATTAAATTAGATAACTTAGAGAACAAGAAAGAAGATGAAGTTGTTCTTCCCGGATTTAGATTTCATCCAACGGACGAAGAGCTTGTCGGATTTTATCTTCGGCGAAAAGTCGAGAAGAAGCCTCTTCGAATCGAACTCATCAAAGAAATCGACATTTACAAATATGATCCATGGGATCTACCAAAACCTAGTACTATGGGGGAGAAAGAGTGTTATTTTTTCTGTCGACGAGGAAGAAAATACAGGAACAGTATAAGGCCAAATAGGGTGACAGGATCTGGATTTTGGAAAGCTACAGGGATTGATAAATCTGTGTATTGTGTTAAAGAATCACATGAATGCATTGGATTGAAGAAATCATTGGTTTACTATCGTGGAAGTGCTGGAAAAGGTACCAAAACTGATTGGATGATGCATGAGTTTCGTCTTCCACCAGCTAAAGGAAAATCTGGGAATAATTCAGTTGTTAATCATCATGGCAATGATGTTCTTGAAGCTGAAGTGTGGACATTATGCAGAATATTCAAACGAATCCCATCATTCAAAAAATACATACCAAATTTGAAAAAAGACTCGGAAACAACACCACCATTCACTACCACCACCAACAACAACTCTTCATCTTCCAACACATGCAGCTTCGAATCCGACAACACCAAATCGTACTCGACTTTCACTGACTCGCAACTTTTTCAACAGAATCATGAAACAAAACCGTTCTTCAACGGACATGTTGACCAAAGGATTAACCACTCATTTCTAACTCAAGTTCCAACAACTTTGTCTCAATCAAGTTTATGGAACGAACATCCAAATGTGGTGGTTGACGATGAAGCATTCGCAAATGAGAATTGGGATGATCTTAGATCTATGGTTCAGTTTACCTTTGATCCTTCAAAGGTTTATGATTGTAAAGACTTTAATTAG 936 0.3782 MDVIKLDNLENKKEDEVVLPGFRFHPTDEELVGFYLRRKVEKKPLRIELIKEIDIYKYDPWDLPKPSTMGEKECYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKSVYCVKESHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPAKGKSGNNSVVNHHGNDVLEAEVWTLCRIFKRIPSFKKYIPNLKKDSETTPPFTTTTNNNSSSSNTCSFESDNTKSYSTFTDSQLFQQNHETKPFFNGHVDQRINHSFLTQVPTTLSQSSLWNEHPNVVVDDEAFANENWDDLRSMVQFTFDPSKVYDCKDFN* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0405 311 ProSiteProfiles NAC domain profile. 18 180 IPR003441 GO:0003677|GO:0006355
Psa2g0405 311 PANTHER - 7 308 - -
Psa2g0405 311 Gene3D NAC domain 27 183 IPR036093 GO:0003677|GO:0006355
Psa2g0405 311 Pfam No apical meristem (NAM) protein 20 146 IPR003441 GO:0003677|GO:0006355
Psa2g0405 311 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 308 - -
Psa2g0405 311 SUPERFAMILY NAC domain 16 179 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0405 Psa-Chr2 16920220 16921480 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0405 1 217 NAC Transcription Factor Family AT5G39820 53.448 1.81e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa2g0405 NAM 7.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0405 - - gsj:114384349 422.935