Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0302 ATGAGAAGACCTAAATCCAAACAGTTTCGTAAACAACAACGCCTCTCAGAAGAAGATGATATCAAGCAGTTGAATTCATGGATTCAGTTCCAGAAACCAGATTCCGGTTCAAACCCAATGTCTCTACCACCTCTCCCCAAAAACTCCCCTGTCGGTCACCTCGGCGACAATACGTTCTCCCGCTACGCCGGCGTCGTGAGGTTTGAGCAGTTGCCACTGTCGAAGAAAACCAAAGACGCATTGCGAAGCTCCAAGTTCGTTTCCATGACTGATATTCAAAGAGCTTCTATTCCTCATGCACTCTGTGGCCGTGATGTTCTCGGTGCCGCTAAAACTGGCTCCGGGAAAACACTTGCTTTCATTATCCCAGTGTTAGAGAAATTGTATAGAGAGAGATGGGGACCGGAAGATGGGGTTGGGAGCATAATAATATCACCTACAAGAGAATTAGCTGGTCAGATATTCGAGGTGTTGAATTCTGTTGGGAAGTACCATGGTTTTAGTGCTGGTCTCCTCATTGGTGGTCGTAAGGATGTTGACACTGAGAAAGAACGTGTCAACGAGCTCAACATTTTGATCTGCACACCTGGTCGCCTTCTACAACACATGGATGAAACTCCTAATTTTGATTGTTCACAGATGCAGGTTTTGGTACTAGATGAGGCTGATCGTATTCTTGACAGTGGATTCAAGAAGGAACTAAATGCAATCATCTCACAGTTACCAAAACGTAGGCAAACTATGCTTTTCTCAGCAACTCAAACGAAATCAGTTCAAGATCTTGCAAGACTAAGTTTGAAGGACCCAGAGTATCTGAGTGTACATGAAGAGTCTGTGGCTGCCACTCCTACTCTCTTGAAGCAAATTGTGATGATTGTTCCTCTGGATCAAAAGTTAGATATGCTGTGGACTTTCATAAAGACTCATCTACAGTTCAAAACAATTGTCTTTCTATCAAGCTGTAAACAGGTAAATTATGTCTATGAAGCATTTAGAAAACTTCACCCTGGCATACCGTTGAAGTGCCTCCATGGGAGGATGAAACAGGAAAAAAGAATGGCAATATATTCCGAGTTCTGTGAGAATCGCTCAGTTCTCTTCTCAACTGATGTAGCTGCAAGAGGCCTTGATTTTAATAAAGCAGTTGACTGGGTTGTTCAGGTAGATTGTCCTGAAAATGTAGCATCTTACATACATAGAGTTGGCCGTACTGCTCGTTATAAATCTGATGGAAAGTCAGTTTTATTTCTATTGCCTTCAGAAACTCAAATGCTTGAAAAGTTAGAAGCAGCAAAGGTTCCAGTGCATTTAGTCAAGCCAAAGAAAGAAAAACTGCAACCAGTGTCCAGCTTGTTGGCATCTTTACTAGTCAAATACCCAGAACTTCAGCAGCGAGCCCAAAGGGCATTTGTCACCTACTTGAGATCCATCCATCTCCAAAAGGATAAAGAGATTTTTGATATTTTGAAACTTCCTATTGATGAGTATTCAGCATCATTAGGTCTACCGATGACCCCCAAAATTCGTTTTATAAACCAGAAACTTAAATCTAAAGCTGTGTCAACAAAATCAAATTTAGCTGAACCAGTGGATCCAAACCAGGAAAATGTCTTAGAAGGTTCTAGAGAAAAGCTAGACAAAATTGTCTTCAAAGACGAGGAAATTGAAAACGATCTTCTTCAAGCAGCTGATACCTCAAAAGAAGATGACACGAAGTCAGCTGATATTGGAGAATTAATACCAGCAACTCGTTTATTAAAGAAAAAAAAGCTCAAGATTAACTTGCATAGACCACTAGGGAGTCGAGTTGTATTCGATGATGAAGGCAACACACTTCCTCCACTAGCCAGGATTGCTGGCACACAAAGTGTCAAGGATTCATTGCTAATTGATCCAGAACAAAAAGCTGAATACTATAAAAGGATGCGAGAGGATTTGAAGAAGGCAGATAAGGAAGATAAACTTGTAGAGCGTCAGCGACTTAGAGAAAAAAGAATCAAGCAGAAAATGAAACGGAAGGCTGATAATATGGAAGAAGAGGACAACCAAGATAATATCTCTGGGTCAGAAGAAGACGAAACTGTAAATAAACGCCGCCATAAAAAGAGTAAAATATACTTTGATAGTGACAGTGACGAGGGTGAAAGAAAAGAAGTCACAGGTAATCAAGGTATTACTTTGCAGGAGCAAGAAGCTTTGGCTTTGAAGTTGTTGCAATCCATGCAAGCATAG 2232 0.4099 MRRPKSKQFRKQQRLSEEDDIKQLNSWIQFQKPDSGSNPMSLPPLPKNSPVGHLGDNTFSRYAGVVRFEQLPLSKKTKDALRSSKFVSMTDIQRASIPHALCGRDVLGAAKTGSGKTLAFIIPVLEKLYRERWGPEDGVGSIIISPTRELAGQIFEVLNSVGKYHGFSAGLLIGGRKDVDTEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKELNAIISQLPKRRQTMLFSATQTKSVQDLARLSLKDPEYLSVHEESVAATPTLLKQIVMIVPLDQKLDMLWTFIKTHLQFKTIVFLSSCKQVNYVYEAFRKLHPGIPLKCLHGRMKQEKRMAIYSEFCENRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSDGKSVLFLLPSETQMLEKLEAAKVPVHLVKPKKEKLQPVSSLLASLLVKYPELQQRAQRAFVTYLRSIHLQKDKEIFDILKLPIDEYSASLGLPMTPKIRFINQKLKSKAVSTKSNLAEPVDPNQENVLEGSREKLDKIVFKDEEIENDLLQAADTSKEDDTKSADIGELIPATRLLKKKKLKINLHRPLGSRVVFDDEGNTLPPLARIAGTQSVKDSLLIDPEQKAEYYKRMREDLKKADKEDKLVERQRLREKRIKQKMKRKADNMEEEDNQDNISGSEEDETVNKRRHKKSKIYFDSDSDEGERKEVTGNQGITLQEQEALALKLLQSMQA* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0302 743 Coils Coil 639 683 - -
Psa2g0302 743 Pfam DEAD/DEAH box helicase 90 261 IPR011545 GO:0003676|GO:0005524
Psa2g0302 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 422 IPR027417 -
Psa2g0302 743 MobiDBLite consensus disorder prediction 663 728 - -
Psa2g0302 743 SMART DUF4217_3 447 510 IPR025313 -
Psa2g0302 743 CDD DEADc_DDX10 77 275 - -
Psa2g0302 743 Gene3D - 56 278 IPR027417 -
Psa2g0302 743 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 218 226 IPR000629 -
Psa2g0302 743 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 446 IPR001650 -
Psa2g0302 743 SMART helicmild6 325 408 IPR001650 -
Psa2g0302 743 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Psa2g0302 743 Pfam Helicase conserved C-terminal domain 298 407 IPR001650 -
Psa2g0302 743 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Psa2g0302 743 Gene3D - 283 593 IPR027417 -
Psa2g0302 743 MobiDBLite consensus disorder prediction 690 719 - -
Psa2g0302 743 PANTHER RNA HELICASE 55 531 - -
Psa2g0302 743 MobiDBLite consensus disorder prediction 1 21 - -
Psa2g0302 743 CDD SF2_C_DEAD 286 417 - -
Psa2g0302 743 Pfam Domain of unknown function (DUF4217) 451 508 IPR025313 -
Psa2g0302 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 274 IPR027417 -
Psa2g0302 743 SMART ultradead3 85 289 IPR014001 -
Psa2g0302 743 PANTHER ATP-DEPENDENT RNA HELICASE DDX10-RELATED 55 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0302 Psa-Chr2 11869440 11875536 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0302 48 429 Eukaryotic Initiation Factors Gene Family AT1G72730 27.461 6.35e-37 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0302 K14776 - gmx:100792106 1221.45