Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0297 ATGGCTTCCACCTACCGTGACCGTACGTCGGAGTTCCGATCACTGACGGAGACTCTAAAGAAGACTGGTGGCGGAGGAGAAGGCACCGCACCGCTAAATCAACAACCGTCTACGTCTCAAGGTTCCTATTCAAGATCTGAATTCAACCGAAAGGCATCACAAATCGGATTAGGAATCCATGAAACCTCACAGAAAATTGCGAGGCTCGCTAAATTGGCAAAGAAATCGTCTCTGTTTAATGATCCGATTATGGAAATTCAAGAACTGACTGCATTGATTAAGACTGATATAACGACGTTGAATTCAGCTGTTTTGAATTTGCAAAATATTCAGAAATTTGATTTGGCTGATGAGAATTACTCAGAAGATAGGGTTGTGCATTCTAATGCTGTTTGCAATGACTTGAAGAACAAGCTCATGGGAGCCACAAAGCATCTTCAAGATGTTTTAACTACTAGGACAGAGAACATCAAGGCTCATGAGAATAGGAAGCAGATATTTTCCAAGAACCCTTTACAGCATCAGCCAAAGCCAACTACTGAGCCACCACCTTGGTCAAATTCAACAAATGCATTTGAAACCGAGAGTTTGCAACAAGCACCAGGAGGACTACCATCAAATGGGATTCCTCCAGCTGGCAATCAGCTAAGACGGAGGTTAGCTGTGGACAATACTCCATCCCAGCAAATGGAGATGTCTTTGGTACAACAGGTTGTTCCTCGGCACGAAGACTATGCCCAAAGTCGATCAACTGCTCTCCACAATGTGGAATCTACTATTACTGAACTTAGTGGAATCTTCTCCCATTTGGCTACGATGGTTGCCCATCAAGGAGAGCTAGCTATCAGGATTGATGACAACATGGATGAATCATTGGCAAATGTTGAAGGAGCCCGCAGTTCTTTATTGAGGCATCTCAACCAAATATCATCAAATAGATGGCTTATGATCAAAATATTTGCCATTTTGATGTTCTTTCTGATGATCTTCATATTCTTTGTGGCCTAA 1008 0.4256 MASTYRDRTSEFRSLTETLKKTGGGGEGTAPLNQQPSTSQGSYSRSEFNRKASQIGLGIHETSQKIARLAKLAKKSSLFNDPIMEIQELTALIKTDITTLNSAVLNLQNIQKFDLADENYSEDRVVHSNAVCNDLKNKLMGATKHLQDVLTTRTENIKAHENRKQIFSKNPLQHQPKPTTEPPPWSNSTNAFETESLQQAPGGLPSNGIPPAGNQLRRRLAVDNTPSQQMEMSLVQQVVPRHEDYAQSRSTALHNVESTITELSGIFSHLATMVAHQGELAIRIDDNMDESLANVEGARSSLLRHLNQISSNRWLMIKIFAILMFFLMIFIFFVA* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0297 335 SMART tSNARE_6 238 305 IPR000727 -
Psa2g0297 335 MobiDBLite consensus disorder prediction 1 47 - -
Psa2g0297 335 ProSitePatterns Syntaxin / epimorphin family signature. 249 288 IPR006012 GO:0005484|GO:0006886|GO:0016020
Psa2g0297 335 MobiDBLite consensus disorder prediction 28 47 - -
Psa2g0297 335 MobiDBLite consensus disorder prediction 159 185 - -
Psa2g0297 335 SUPERFAMILY t-snare proteins 44 298 IPR010989 GO:0016020|GO:0016192
Psa2g0297 335 Gene3D - 42 298 - -
Psa2g0297 335 PANTHER SYNTAXIN 4 334 IPR045242 -
Psa2g0297 335 CDD SNARE_syntaxin5 246 321 - -
Psa2g0297 335 Pfam SNARE domain 280 331 IPR000727 -
Psa2g0297 335 PANTHER SYNTAXIN-31 4 334 - -
Psa2g0297 335 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 243 305 IPR000727 -
Psa2g0297 335 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 21 IPR021538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0297 Psa-Chr2 11767156 11772696 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0297 1 335 SNARE and Associated Proteins AT5G05760 60.172 1.08e-139 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0297 K08490 - gmx:100777383 464.151