Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0254 ATGGCTATTATCATTCCTTCAACAATGGAACCTCTTTCTTTCAAGGTTTTCACCCTCATTGCCTCTTCTGCATTGGACAAATTCATGAAAATTATGGAGACAATTTTCTTGGCTGTATTCGTTTTTGTTCTAGCACTAGGAGGTTCGATAATAGGAACAATAGGAGGAGCTATCAAAGGACAAACTACAGAAATTGGTTTTGTTGATGGAGCTTGCAGAGGAGCCATTGCAGGAGCCATTGCAGCCATAGAGTTTATGCCTTTTGTTTCTCTTGCTCAGCCTTTTTCCAAGGTAGCTTTGTTGACAAGTTTGTTAAATGGAAAAGTGTTCATGGAATGGATATGTCCAACTGTTGCACAAGCTTATATAAATTCATTAGAAGCAACCTATGGAGGAGTGGTTTCAGATATTAATGAGAGCATGGGAGTTAAAGGAATGTCACAAACTTGTATTATGAAACTTCCATTTCATACTTTCAACTCCTCCGACAAAATCATGAAACTATACAATGATTCATGCTGCTCCATTTGCTTCCAGGATTTAGAGGATGGAGAATTGGATTTAGAGGATGGAGAATTGGTGAGAATACTTTCAAAATGTTGTCACGTTTTTCATCTAGAATGCATTGACAAGTGGCTACTACAACAAGGATCGTGTCCCATTTGTAGAACTTACATTCTTGAATAG 687 0.3785 MAIIIPSTMEPLSFKVFTLIASSALDKFMKIMETIFLAVFVFVLALGGSIIGTIGGAIKGQTTEIGFVDGACRGAIAGAIAAIEFMPFVSLAQPFSKVALLTSLLNGKVFMEWICPTVAQAYINSLEATYGGVVSDINESMGVKGMSQTCIMKLPFHTFNSSDKIMKLYNDSCCSICFQDLEDGELDLEDGELVRILSKCCHVFHLECIDKWLLQQGSCPICRTYILE* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0254 228 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 13 226 IPR044523 -
Psa2g0254 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 226 IPR013083 -
Psa2g0254 228 Pfam Ring finger domain 174 223 IPR001841 -
Psa2g0254 228 ProSiteProfiles Zinc finger RING-type profile. 174 223 IPR001841 -
Psa2g0254 228 SMART ring_2 174 222 IPR001841 -
Psa2g0254 228 SUPERFAMILY RING/U-box 167 226 - -
Psa2g0254 228 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 13 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0254 Psa-Chr2 9578068 9579153 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0254 31 226 C3H Transcription Factor Family AT5G66070 33.493 8.94e-31 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0254 - K19041 gmx:100305612 228.024