Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0236 ATGGACGAGGTTACGGAGCCGACGGTAGATCCTCCACCGGAAGTCGAGAACGGAGGAGGAGAACCATCGGAGGAACCGTGTAGCAAGAAGGCGAAGGTTGATGAAGTTGATAAATCGGAGGCGGAATTGAAACGAGTGGCGGAGATTGTTTTGGTTTTATCAACGATGGCGGAGATGCGAGGTGGAAAGAATCCGACTGACGTGGAGGTTGAGCTCATGAGAGAGGCTCGGAGTAAGCTCGCAATTCTCTGCCAGGGGATTGCTCCCAAGGATATTGTTGCTCGTGAAGCTATTGGTGCCGTTATTGAGGATCTCGGTTTGAACGCTAAGGTTGGGGACCAGAGGTTAGGGTTTCGTACTCCTAAGATGTCCATTGCTGAGAAGTATGCGTTCAATAAGTCCAAGATGGAGGAATCAAAGAAATTATTATCTGCATCTTCTACAACATATACATCTCAATCCTTGCAAACAAACACCGGTGGCATGGTTGACAATCGTGTTCCAACAAATGCTGTTCGAACGTTCTCATCTGATAAATCAAACAACATGGCAGTAACTTCTTCAGTTTCGATGGTGTCTATTCCTCCCCATCTTTCTCCAGGATCTTCTGCAGCATTGCAATATCAGTCAACCAGCAATGAAGTCAGACCGCCCATTGTTTCTGGTGTAATACCTAGCAGTCACATGGGGAGAAATCCATCTTCTGTAGGATTGCCTAGAGTCGAAAACCCACAGTTTAAAGTTACTGGAGGACTGAGTGGGGCCCCTTATGTGCTTCAGGTCCAAGCAAATTCATTGGCAAACCAATCATTAGTGAATGCTCCTACATGGTCAATACAGACTCAACCTGTGTCATTAGCTAGAAGTGTATCAGAAAACAAGGCGCCTGCTCATAATCCTCCCAAGGTGGAAGGAACTGCCGATGTAATTGTATCGAGGGCAGGTCCACAAGTAGCAACAGGTCAGAGCATTAGACCATTTATTACTCAAACGGGACCTGGAAATATGTCTAGTATACACCAGCCATTGCAGGGTGGGAACATGGTTCAACCTCCTTTGATTCCTAGTCACTCTGATATTGCAAAGATTGTCCAGAAATTATTACTACCAAAGCTTCCTGAACATCGCACATGGATTCCTCCGTCAAGGGATTACATGAATAAGGCTTTCACATGTCAGACATGTGAGCTCACTGTCAGTGAGGTTGATTCTGTTCTTCTCTGTGATGCTTGTGAAAAGGGATTTCACTTAAAGTGCCTGCAGCCATCAGTAATTAGAGGAATTCATAATAGAGTTGATTGGCACTGCACGAGATGCTTGAGTTTAAGCGGCGGAAAGTCTTTGCCTCCAAAATATGGCCGTGTGACGAGATCTTCAATTACATCACCAAGTTTTCCCTCTAATACAGTTGGTATTCAACCATCTTCAGAGAAGAAAGCAGATAGCTTAGATCTAAAGGTCAGCCCACAATTTTTTACAACAAATGGAAACTCTATCCCAACTGTTTCCAGTGCCAATCACAGTACTGAGCCGTCATTTGACTCAAATACCCCACACACAAGAGATATACAAGGTTCCATCATTTCATCTAGCATTGAAACCATTGAAGAGAAGCCTGATCCAAGCATATTTATGAAATCTGCAGCTTGTAATGTTTCCACTGGCTTGCAGGGTGAAAGTTGTGCTGAACAGATAGATTCAAAGGCTTTGACCTGTAAAGATACTTCTGAATCAGAAATTCTTCCTAAATTATCCGAGCCGGCTAAATGTGAAAATTTGCAATCCTCACAAGATTCTCATGTTGAGATGGCAGTGTCAGAGGACAATGCTGAAATATCACCAGATAGACATGATAGCAGTAGTTTTATCATTAGTAATCAAAAGGAATCTCATGGAGGAGAAAATATAACTCACGATATCAAGAGCGATGATCTAGATGTTGCACAACCAATTTCTGTTGGAAGTTCTGGAACTAATACTGAAGGTATTCAGAACTCTGCTATATCTTCAGATAGCTCACATGCTGTTGAATGGATTGGTGATGTTGTACAACTCGTAGATGAGAAAAAGTATTACCAATCTTGCTGCATTGATGGTGTAACATATAGGCTGCATGGTCATGCTTTTTTTACATCCAACCATGGCAAACTGACACCTTCTAAACTTCAGTCCATGTGGGAAGATTCCAAAACTGGGATGAAGTGGGTAAAGGCAACAAAGTGCTACTTTCCCGATGATTTGCCGGGAAATATTGGTCATCCTTGTATATCTGAAGTCAATGAGGTTTATGAATCTAATAGTGATAGGATTGAAATGGCTAGCTCTATCCGAGGTCCATGTGTAGTCCTTCCATACGATAAATTTAAACAAGAAAATGATAGAAGATCTCAATTTGGAATTGAAGCAAGTGTTAGTGTACAGCCCATTTTCCTTTGCAGGTGGTTTTATGATGAAATCAAAAAGTCATTTCAACCCGTTATCAGTTGA 2487 0.4242 MDEVTEPTVDPPPEVENGGGEPSEEPCSKKAKVDEVDKSEAELKRVAEIVLVLSTMAEMRGGKNPTDVEVELMREARSKLAILCQGIAPKDIVAREAIGAVIEDLGLNAKVGDQRLGFRTPKMSIAEKYAFNKSKMEESKKLLSASSTTYTSQSLQTNTGGMVDNRVPTNAVRTFSSDKSNNMAVTSSVSMVSIPPHLSPGSSAALQYQSTSNEVRPPIVSGVIPSSHMGRNPSSVGLPRVENPQFKVTGGLSGAPYVLQVQANSLANQSLVNAPTWSIQTQPVSLARSVSENKAPAHNPPKVEGTADVIVSRAGPQVATGQSIRPFITQTGPGNMSSIHQPLQGGNMVQPPLIPSHSDIAKIVQKLLLPKLPEHRTWIPPSRDYMNKAFTCQTCELTVSEVDSVLLCDACEKGFHLKCLQPSVIRGIHNRVDWHCTRCLSLSGGKSLPPKYGRVTRSSITSPSFPSNTVGIQPSSEKKADSLDLKVSPQFFTTNGNSIPTVSSANHSTEPSFDSNTPHTRDIQGSIISSSIETIEEKPDPSIFMKSAACNVSTGLQGESCAEQIDSKALTCKDTSESEILPKLSEPAKCENLQSSQDSHVEMAVSEDNAEISPDRHDSSSFIISNQKESHGGENITHDIKSDDLDVAQPISVGSSGTNTEGIQNSAISSDSSHAVEWIGDVVQLVDEKKYYQSCCIDGVTYRLHGHAFFTSNHGKLTPSKLQSMWEDSKTGMKWVKATKCYFPDDLPGNIGHPCISEVNEVYESNSDRIEMASSIRGPCVVLPYDKFKQENDRRSQFGIEASVSVQPIFLCRWFYDEIKKSFQPVIS* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0236 828 ProSiteProfiles BAH domain profile. 700 827 IPR001025 GO:0003682
Psa2g0236 828 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 14 827 - -
Psa2g0236 828 MobiDBLite consensus disorder prediction 1 36 - -
Psa2g0236 828 ProSiteProfiles Zinc finger PHD-type profile. 389 442 IPR019787 -
Psa2g0236 828 CDD BAH 699 826 - -
Psa2g0236 828 Gene3D - 679 827 IPR043151 -
Psa2g0236 828 SMART PHD_3 391 440 IPR001965 -
Psa2g0236 828 ProSitePatterns Zinc finger PHD-type signature. 392 439 IPR019786 -
Psa2g0236 828 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 381 458 IPR013083 -
Psa2g0236 828 Pfam PHD-finger 392 440 IPR019787 -
Psa2g0236 828 SUPERFAMILY FYVE/PHD zinc finger 382 443 IPR011011 -
Psa2g0236 828 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 14 827 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa2g0236 PHD 2.7e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0236 - - gmx:100807139 1130.16