Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0217 ATGGATGCTGCCACCACCAACTCCGGCGAATTCAACTCGAGTTCGGAGCTCCCGGTCGAAGTGAATCGAACAGTGTCGGGTCTCAATTCGATGGCGAGGTACAAGCTTTTGTCTCCGGCGAAGCTTCCGATCTCGAGGTCGCCTTGCATCACAATACCTCCGGGGCTTAGTCCGACGTCATTATTGGAGTCTCCGGTTCTTCTTTCGAACATGAAGGTAGAGCCATCACCGACTACCGGGTCCTTTCTTCAAGCTTTACATTGTTCTATGGCTTCTCCTGGTTCTGCTACATTTTCTGTAACCTCTGCTTGCTTCAATACCAGCGCTGCTAATGGCAGAAAATCAAGTTTCTTTGAGTTTAAACCACATGATAGAAATATGGTTCCTGCAGACTTCAACAACGACTTAAGCGAACAATCTACTCAAGTAGAAGGTCAAGAAAAAATTCAATCGTTTCGTTCCTCACCGTTAAATGAAAATGAGATAGAAGATCAATCTAATGAATTAAGCCTATCATCACCTGTTCAAATGGTTAGTTCCGGCACTTGTGCTCCCGTTGATGTCAATTCGAATGAACTTAACCTCAAAGGCAACGCAGCTAATGGCCCTCAATCGTTTAACGATGGATACAATTGGCGAAAGTATGGACAAAAACATGTTAAAGGAAGTGAATTTCCCCGCAGCTACTACAAATGTACGCATCCTAACTGTGAAGTGAAAAAACTTTTCGAACGCTCTCATGACGGTCAAATCACCGAGATTATTTATAAAGGAACACATGATCATCCTAAACCTCAACCAAGCAACCGATACTCGGCTGGTTCTGTTATGTCTACGCAAGGAGAGAGGTCCGGTAATAGGATAGACAAAGCATCTAATAGTCCAGAGCAATCACCTGTAGCAACAAATGATCTTAGTCTAGACGGTGCTAGATTTGCGTCAACTAGGATAAATGACGAGGTTGATGACGATGATCCCTTCTCCAAGCGAAGAAAAATGGAACTTGGAAATGCCGAAATCATTCCTATTGTTAAGCCTATCCGAGAGCCGCGAGTTGTTGTACAGACTATGAGCGAAGTTGATATATTGGACGATGGATACCGCTGGCGTAAATATGGACAGAAGGTGGTGAGGGGTAATCCTAACCCAAGGAGTTATTACAAATGTACAAATGCGGGTTGCCCCGTGAGAAAACACGTGGAGAGGGCTTCGCATGATCCGAAAGCTGTAATAACAACATACGAAGGTAAACACAATCACGATGTACCTGCGGCAAGGAATAGTAGCCATGACATGTCAAGACACGCAGCTTCAATTGAAACGAAAAGGATAAAGTTGGAAGAAAGTGATACTATTAGTCTTAACCTTGGGATGGGAATCAACTCAGCAACTGAAAATAGATCGATTGGCCAAAGGCAGATGCTGCTCTCCGAATTCGGTAATAACAGTCAAACTCAAACAAGCAATTCCAATTTCAAGTTTGTTCATACTACATCGGTTCCGGTATACTACGGTGTTCTAAACAACGGTTCAAATCCATTTGGTTCTAGAGAAAATAGGAACGATGGTTCATCTTTGAACCGTTCCGCGTATCCTTGCACGCAGAACATGGGAAGAGTACTAATGGGGCCATGA 1635 0.4373 MDAATTNSGEFNSSSELPVEVNRTVSGLNSMARYKLLSPAKLPISRSPCITIPPGLSPTSLLESPVLLSNMKVEPSPTTGSFLQALHCSMASPGSATFSVTSACFNTSAANGRKSSFFEFKPHDRNMVPADFNNDLSEQSTQVEGQEKIQSFRSSPLNENEIEDQSNELSLSSPVQMVSSGTCAPVDVNSNELNLKGNAANGPQSFNDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPSNRYSAGSVMSTQGERSGNRIDKASNSPEQSPVATNDLSLDGARFASTRINDEVDDDDPFSKRRKMELGNAEIIPIVKPIREPRVVVQTMSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAARNSSHDMSRHAASIETKRIKLEESDTISLNLGMGINSATENRSIGQRQMLLSEFGNNSQTQTSNSNFKFVHTTSVPVYYGVLNNGSNPFGSRENRNDGSSLNRSAYPCTQNMGRVLMGP* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0217 544 ProSiteProfiles WRKY domain profile. 358 423 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa2g0217 544 SUPERFAMILY WRKY DNA-binding domain 205 265 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa2g0217 544 ProSiteProfiles WRKY domain profile. 201 265 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa2g0217 544 SUPERFAMILY WRKY DNA-binding domain 355 423 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa2g0217 544 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 26 524 IPR044810 GO:0003700
Psa2g0217 544 Pfam WRKY DNA -binding domain 207 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa2g0217 544 Pfam WRKY DNA -binding domain 364 420 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa2g0217 544 Gene3D WRKY domain 197 266 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa2g0217 544 Gene3D WRKY domain 348 424 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa2g0217 544 MobiDBLite consensus disorder prediction 256 304 - -
Psa2g0217 544 SMART WRKY_cls 363 422 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa2g0217 544 SMART WRKY_cls 206 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa2g0217 544 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 26 524 - -
Psa2g0217 544 MobiDBLite consensus disorder prediction 265 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0217 Psa-Chr2 8098650 8102836 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0217 37 544 WRKY Transcription Factor Family AT4G26640 54.731 4.84e-177 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa2g0217 WRKY 1.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0217 - - gmx:100816583 800.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g0217 2 8098650 8102836 Psa2g0217 2 8098650 8102836 ECH
Psa5g3953 5 310926289 310931062 Psa2g0217 2 8098650 8102836 PCT