Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0215 ATGTCATATGAATCCGACATGTTCAGCATCGATCCTATTCAAAATCTCGACTCATATTGCTTTCTACCAAATGAGAATCTCGAAAACTACTCGTCCTCCGATAACGGTAGCCATTTAACCTACCCTTCATTTCAAGCTTCAGAACAATATTCTGCCTTTGAATCTAGTAACAACAGTCCAGTCTCAAAGCTACATTCAAAATCTTACGCGTTCACGTCACAAAATTCTCTTGAAATCATCAACAATTCGTTAGAGAACGAGTCGTGTTTGACACATAACCAAGATGACTTGTGGCACAAGATAAGAGAGCTTGAAAATGCTATGCTTGGACATGATGCAGTCGATATTGATATGATTCAAGAAGAATCTGATCCACTTTTGTTAGAGGCGGAAAAGTGGAACAAAATGATGCAGATGATATCGAGAGGCGATTTGAAAGAAGTGCTTTTTACTTGTGCGAAAGCCGTATCAGAAAACGATATAGAAACAACTGAATGGTTAATGTCAGAGTTGTCGAAAATGGTTTCGGTTTCGGGAAGTCCAATCCAAAGGTTAGGAGCATACATGTTGGAAGCTCTTGTTGCAAGAATCGCTTCTTCAGGAAGCATAATTTACAAATCCTTGAAATGTAAAGAACCTACCATTGCTACAAGTAATGAACTCCTTTCACACATGCATGTGCTTTACGAAATCTGTCCTTACCTGAAATTCGGATACATGTCCGCAAACGGAATCATTGCCGAAGCGTTGAAGGATGAAAGTGAAGTTCATATAATTGATTTTCAGATTAATCAGGGAGTTCAGTGGATAAGTCTAATCCAAGCTCTTGCTGGAAAACCAGGAGGACCACCGAAGATCAGAATAACCGGTTTCGATGATTCGACTTCAGCTTATGCAAGAGGAGGAGGACTTGATATTGTTGGACAAAGGTTGTCGAAACTCGCACAATCATATAATGTATCGTTTGAGTTCCATTCTATAAAGGCTAATCCTACTGAGGTGAAACTCGAAGACTTTGAACTTCGTCGCGGTGAAGCTATTGCAGTGAATTTCGCGATGACACTACACCATGTACCGGACGAAAATGTTCACGGAGGTCAGAATCATCGCGGCCGGTTGGTGAGATTGGTGAAATGCTTATCTCCTAAGGTAGTGACTCTTGTTGAACAAGAATCAAACACCAACGAGCTTCCGTTCTTCGCACGTTTCGTCGAGACAATGAACTACTACTTGGCAGTTTTCGAATCAATCGATGTTGCTTTGCCAAGGGAGCACAGAGAAAGGATTAACGTCGAACAGCATTGTTTAGCTCGCGAAGTTGTCAATTTAATCGCGTGCGAAGGCGCGGAAAGAGTCGAACGTCACGATCCTCTTGAGAAGTGGAAATCATGTTTCACAATGGCTGGATTCACATCATATCCATTGAGTCCTTATATCAATAGTTCAATAAAGAATCTTCTAGAAAGTTATCAAGGACATTACACTCTAGAAGAGAATGATGGTGCTCTTTATCTTGGTTGGATGAATCAGGCTCTTATTACCTCTAGTGCTTGGAGGTGA 1560 0.4096 MSYESDMFSIDPIQNLDSYCFLPNENLENYSSSDNGSHLTYPSFQASEQYSAFESSNNSPVSKLHSKSYAFTSQNSLEIINNSLENESCLTHNQDDLWHKIRELENAMLGHDAVDIDMIQEESDPLLLEAEKWNKMMQMISRGDLKEVLFTCAKAVSENDIETTEWLMSELSKMVSVSGSPIQRLGAYMLEALVARIASSGSIIYKSLKCKEPTIATSNELLSHMHVLYEICPYLKFGYMSANGIIAEALKDESEVHIIDFQINQGVQWISLIQALAGKPGGPPKIRITGFDDSTSAYARGGGLDIVGQRLSKLAQSYNVSFEFHSIKANPTEVKLEDFELRRGEAIAVNFAMTLHHVPDENVHGGQNHRGRLVRLVKCLSPKVVTLVEQESNTNELPFFARFVETMNYYLAVFESIDVALPREHRERINVEQHCLAREVVNLIACEGAERVERHDPLEKWKSCFTMAGFTSYPLSPYINSSIKNLLESYQGHYTLEENDGALYLGWMNQALITSSAWR* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0215 519 Pfam GRAS domain family 145 519 IPR005202 -
Psa2g0215 519 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 12 518 - -
Psa2g0215 519 ProSiteProfiles GRAS family profile. 136 519 IPR005202 -
Psa2g0215 519 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 12 518 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0215 Psa-Chr2 8071548 8074899 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0215 12 519 GRAS Transcription Factor Family AT5G48150 56.360 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Psa2g0215 GRAS 8.2e-129 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0215 - - cam:101502619 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g0215 2 8071548 8074899 Psa2g0215 2 8071548 8074899 ECH
Psa5g3952 5 310921663 310924837 Psa2g0215 2 8071548 8074899 PCT