Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0175 ATGGCTGATTCAGACAACGAGTCAGGAGGAGCACCGAACGCCGGTAACAGCGAGCTATCACCTCGTGAACAAGACCGATTCCTACCGATAGCGAACGTGAGTAGAATCATGAAGAAAGCGTTACCTGCAAACGCGAAGATCTCGAAAGACGCGAAAGAAACGGTTCAAGAATGCGTGTCCGAGTTCATAAGCTTCATCACCGGCGAAGCCTCCGATAAGTGTCAGAGAGAGAAACGAAAGACGATCAACGGCGACGATCTACTGTGGGCGATGACTACGTTAGGATTCGAAGAGTACGTTGAGCCTCTGAAGATTTATCTTCAACGATTCAGAGAGATCGAAGGTGAGAAAACCGTTGCGGCACGTGACAAAGACGTTGCTCCTTCTTCGTCTTCGTCTTCGGTTTTCGAATACGGTGCTCCTCAGGTTGGAATGATCATGCAGCATCAGGGACACGTGTACGGCTCTGGTGGTTACCATCAAGTGCCTGGTGGGCCAGGTTATCCTAATGCTGGATCTAATACGGGTAGACCCAGGTAG 540 0.5019 MADSDNESGGAPNAGNSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQRFREIEGEKTVAARDKDVAPSSSSSSVFEYGAPQVGMIMQHQGHVYGSGGYHQVPGGPGYPNAGSNTGRPR* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0175 179 MobiDBLite consensus disorder prediction 1 24 - -
Psa2g0175 179 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Psa2g0175 179 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Psa2g0175 179 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Psa2g0175 179 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
Psa2g0175 179 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Psa2g0175 179 SUPERFAMILY Histone-fold 24 127 IPR009072 GO:0046982
Psa2g0175 179 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 149 IPR027113 GO:0001228|GO:0006355|GO:0016602
Psa2g0175 179 Gene3D Histone, subunit A 16 135 IPR009072 GO:0046982
Psa2g0175 179 MobiDBLite consensus disorder prediction 156 179 - -
Psa2g0175 179 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0175 Psa-Chr2 6745168 6746626 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0175 1 121 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.777 2.48e-75 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Psa2g0175 CBFD_NFYB_HMF 1.5e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0175 K08065 - gmx:100813580 271.166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g0175 2 6745168 6746626 Psa2g0175 2 6745168 6746626 ECH
Psa5g3894 5 307209343 307210601 Psa2g0175 2 6745168 6746626 PCT