Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0152 ATGAATTCTAGGTGTTTGTTGAATTCCAACAGCATGGTTCAATCTTCGAACTCTGCAGAAGAAGAAGAAAGAGTGGATGGTTCTAGAAATAGCCATCGGCCTGAACGTGTGTCGTTGCCGCCTTCGTTTTCGGTTCGGATGGCTATGAGAATATCTAGATCAAGATGGTTTACTTTTTTAAGAAGAGTTTTCCATTATCAGAATGGGTCGAGGTCTAGTCTTGGCTCGAATCCTTTCAATTCTAGCACTTGGTTGATGTTGGAGTTTAGTGCTTTGATTGTTCAAATCATCGTTTCAACGTTTACTTTGGCTGTTTCGAATATGGAAAAACCTGTTTGGCCTATGAGGGTGTGGATATCTGGTTATGATATTGGATGTGTTCTTAATTTGCTTGTGGTTTATGGACGGTACCGACAAATTTATCTGGTTCAAGGAGATGCTCTAAGCCTTTCTAATATGGAACAACAGAGGAATAGTGAAGACACAAGTGTTTACAGGATGTCACACTTGATGAACAAATGCAGGACTTCATTGGAGCTTTTCTTTGCCATATGGTTTGTGATGGGAAATGTTTGGGTTTTCGACTCACGTTTCGGTTCATTTCAACAAGCTCCAAAACTTCATGTCCTCTGCATCACCTTGCTTACATGGAATGCAATCTGTTACTCTTTCCCTTTCCTACTTTTTCTCTTGTTATGCTGCTGCGTACCACTGATTAGCTCCCTCCTCGGTTACAACATGAACATCGCATCTTCTAATAAAGGAGCAACCGATGAACAAATTTCACAACTTCCAAGTTGGATACACAAAGATCCTCCTCATACTACGAAGTTAGATCTCGGAAACGACTCTCAAAGCATTGAAAAATTCATCAATGAAGATCCGGAATGTTGCATTTGCTTAGCCAAGTACAAAGACAAAGAAGAAGTTAGAAAATTGCCATGTTCTCATGTGTTCCATCTAAAATGTGTGGACCAGTGGCTGAAAATTATATCTTGCTGCCCACTTTGCAAACAAGGATTAGAGAGGTAG 1032 0.4021 MNSRCLLNSNSMVQSSNSAEEEERVDGSRNSHRPERVSLPPSFSVRMAMRISRSRWFTFLRRVFHYQNGSRSSLGSNPFNSSTWLMLEFSALIVQIIVSTFTLAVSNMEKPVWPMRVWISGYDIGCVLNLLVVYGRYRQIYLVQGDALSLSNMEQQRNSEDTSVYRMSHLMNKCRTSLELFFAIWFVMGNVWVFDSRFGSFQQAPKLHVLCITLLTWNAICYSFPFLLFLLLCCCVPLISSLLGYNMNIASSNKGATDEQISQLPSWIHKDPPHTTKLDLGNDSQSIEKFINEDPECCICLAKYKDKEEVRKLPCSHVFHLKCVDQWLKIISCCPLCKQGLER* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0152 343 MobiDBLite consensus disorder prediction 1 35 - -
Psa2g0152 343 CDD RING-H2_RNF111_like 295 338 - -
Psa2g0152 343 SUPERFAMILY RING/U-box 289 341 - -
Psa2g0152 343 SMART ring_2 297 337 IPR001841 -
Psa2g0152 343 Pfam RING-like zinc finger 296 324 IPR001841 -
Psa2g0152 343 ProSiteProfiles Zinc finger RING-type profile. 297 338 IPR001841 -
Psa2g0152 343 MobiDBLite consensus disorder prediction 19 33 - -
Psa2g0152 343 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 15 342 - -
Psa2g0152 343 MobiDBLite consensus disorder prediction 1 18 - -
Psa2g0152 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 342 IPR013083 -
Psa2g0152 343 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 15 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0152 Psa-Chr2 5693286 5696606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0152 30 341 C3H Transcription Factor Family AT4G26580 66.667 1.13e-143 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0152 - - gmx:100813670 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g0152 2 5693286 5696606 Psa2g0152 2 5693286 5696606 ECH