Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0142 ATGTATAGTGGTTCTTCCTGTCGCGGTTTGCGTCTAATAATTGATTCTTTTATACTTGAGTGCAACAGTCCAAATATACTAGAAGAAGCCATGTCGAGGATATGCGTGAAGAATCTCCCTAAATATGTTGCCGAGGATCGACTTAGAGAATTATTTTCTCAGAAAGGAGAAATAACTGATGTCAATCTGCGTACCAAAAACGGAAGAAGTCGCCAATTTGCCTATATTGGCTTCCGTACAGACCAGGAAGCTCAGGAAGCCATTCAATATTTTAATAAATCCTACCTTGACACACTTAGAATTACCTGTGAGGTGTCTCAGAAACGCAATGATGCAAATCTTCCTCGTCCGTGGAGTCGGCATTCAACAAAAAAGGACAATAAAGTGATCGCCCCAGATGCAAAAAAACATGCTAGAGCTAAAGGGCAAGAAGACAATTCTAAGGACCCGAAGCTTCAAGATTTTCTTCATGTCATGCAACCTCGTGCAAAGTCTAAGCTGTGGGAAAACGACACTGCACTTGTATCCAATGATGGTAACAACCAAGCAGCATTGAATAAAGAGACGGATGGTACATCAATTGCAAACCATCCTATCTTAAGCGACACACAAGTAGTTGGATTACCAAATAATCCCGATTCCGACAAGTCACGTGAGCTTATGACTGATATGGATTATTTCAAGAGTAGAGTGATAACAGAGTGGTCTGATTCTGCAAGCAGCGATGATGAAAACGACAATGACAACAGTGATGATGACGAAGATAACCGCAGTCATGGTAGTGAATGTGAAGAAGATTGTGGTAATAACCCTTCTGAAAGAGACCCAAGAAGTGGTGCTCAAGAGTTAGATCTAGAGGGCCAAGAAGATATTTTTGGAGAGGATGTTGCCAACGATAAGTTTCAAGTGAGTGCAACTGAGGAGAAGAAAGAAGATTCTGAGTCATGTCGACTCTTTGCCCGTAATCTGCCATACACGACCACGGAGGAGGAACTGGAAGAGCATTTCAGTCAGTTTGGCGGTGTCTCACAGGGAGGAGGAACTGGAAGAGGCATTTCAGTCAGTTTGGCGGTTGTCTCACAGGTTTCATTTAGTTGTATAAGGAAAACGAAACGAGTAAAGGGAATTGCTTATATTATATTTATCAGAATTCCAGATTTTTGCAGCACAGGAACAATTGTTTCCCAAGGATCAAGGAAAAAAACTCTCAAAAAACGAAGAGAAGAAGGGGAAAGAGCTGACAACATTGTAGAAAATGCTGCGGATGGGATATGGTGTTCTAGTAAAGTGATTACTGATCAGAGAGCTGATGATCTTGCTGTACCTGGAGATTTGGAGGAGCTGAGAGGAAGTAAAGTTGATGGCATTAAAAGAAGTAACCATGTAATTTTAGCCAAGAATTTGCCCTATGGTGCTACCGAAAATGAACTTGCAAACATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCCTCCACGAAAACATTGGCCCTGGTTGTTTTCCTTGAAGCAGCAGAAGCTAAAGCTGCTTTTAGAGGTTTAGCTTACAAGCGTTACAAGGATGCTCCCTTATACTTGGAGTGGGCTCCTTCCAATGTTGTTAGCCCAAAATCAACATCTAAAGATAACGAGATGAATAGTGGAATTGGTGAAAAGGATGTCAAGCGACAGAAACTGGAGCAAGATGTGGAAAGAATATCAGATGTCGAAATTGATCCAGACAGAGTAGAGGCTCGGTCCCTGTTTGTCAAGAACCTAAGTTTCAAGACAACAGATGAGGGTTTGAGGAAACATTTCAGTCAACACATGAAAGAGGGAAAATTTTTGAGTGTCAAGGTGAAGAAGCATTTGAAAAATGGGAAAAATGTTTCTATGGGGTTTGGATTTGTTGAGTTTGACTCCACAGAGACTGCTACAAGTGTTTGCAGCGATTTACAGGGGAGTGTTTTGGACAGTCATGCTCTTATCTTACAACTTTGTCATGTCAAGAATGATGGTAAAGTACAAAAGAGAGTTGAGAAAGACAAGAGTTCAACCAAGTTGCTTGTGAAAAATGTTGCTTTTGAGGCAACAAAGAAGGATCTGAGACAATTGTTTAGCCCGTTTGGCCAGATTAAAAGTTTAAAATTGCCAATGAAGTTTGGAAATTATAGAGGGTTTGCTTTTGTGGAGTATGTTACCCAGCAGGAGGCACAAAATGCTCTTACAGCTCTCTCAAGCACCCACTTGTATGGCAGACATCTTGTGATAGAGAGAGCGAAAGAAGGTAATAGTTTGGAGGAACTGCGGGCTCAAACTGCTGTTCAATTTAATGCTAATAACTCATCCAAGAAAAGGAAAGCCATCAGTATGCTTGATGAAAGGTTTGATTAG 2379 0.4094 MYSGSSCRGLRLIIDSFILECNSPNILEEAMSRICVKNLPKYVAEDRLRELFSQKGEITDVNLRTKNGRSRQFAYIGFRTDQEAQEAIQYFNKSYLDTLRITCEVSQKRNDANLPRPWSRHSTKKDNKVIAPDAKKHARAKGQEDNSKDPKLQDFLHVMQPRAKSKLWENDTALVSNDGNNQAALNKETDGTSIANHPILSDTQVVGLPNNPDSDKSRELMTDMDYFKSRVITEWSDSASSDDENDNDNSDDDEDNRSHGSECEEDCGNNPSERDPRSGAQELDLEGQEDIFGEDVANDKFQVSATEEKKEDSESCRLFARNLPYTTTEEELEEHFSQFGGVSQGGGTGRGISVSLAVVSQVSFSCIRKTKRVKGIAYIIFIRIPDFCSTGTIVSQGSRKKTLKKRREEGERADNIVENAADGIWCSSKVITDQRADDLAVPGDLEELRGSKVDGIKRSNHVILAKNLPYGATENELANMFGKFGSLDKIILPSTKTLALVVFLEAAEAKAAFRGLAYKRYKDAPLYLEWAPSNVVSPKSTSKDNEMNSGIGEKDVKRQKLEQDVERISDVEIDPDRVEARSLFVKNLSFKTTDEGLRKHFSQHMKEGKFLSVKVKKHLKNGKNVSMGFGFVEFDSTETATSVCSDLQGSVLDSHALILQLCHVKNDGKVQKRVEKDKSSTKLLVKNVAFEATKKDLRQLFSPFGQIKSLKLPMKFGNYRGFAFVEYVTQQEAQNALTALSSTHLYGRHLVIERAKEGNSLEELRAQTAVQFNANNSSKKRKAISMLDERFD* 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0142 792 CDD RRM5_RBM19_like 581 662 IPR034423 -
Psa2g0142 792 Gene3D - 22 147 IPR012677 -
Psa2g0142 792 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 581 664 IPR000504 GO:0003723
Psa2g0142 792 SUPERFAMILY RNA-binding domain, RBD 570 669 IPR035979 GO:0003676
Psa2g0142 792 SUPERFAMILY RNA-binding domain, RBD 24 119 IPR035979 GO:0003676
Psa2g0142 792 MobiDBLite consensus disorder prediction 236 280 - -
Psa2g0142 792 MobiDBLite consensus disorder prediction 112 151 - -
Psa2g0142 792 SMART rrm1_1 317 404 IPR000504 GO:0003723
Psa2g0142 792 SMART rrm1_1 582 660 IPR000504 GO:0003723
Psa2g0142 792 SMART rrm1_1 33 104 IPR000504 GO:0003723
Psa2g0142 792 SMART rrm1_1 682 753 IPR000504 GO:0003723
Psa2g0142 792 SMART rrm1_1 462 529 IPR000504 GO:0003723
Psa2g0142 792 SUPERFAMILY RNA-binding domain, RBD 676 766 IPR035979 GO:0003676
Psa2g0142 792 PANTHER RNA-BINDING PROTEIN 19-RELATED 32 776 - -
Psa2g0142 792 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 32 776 - -
Psa2g0142 792 CDD RRM6_RBM19_RRM5_MRD1 681 755 - -
Psa2g0142 792 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 108 IPR000504 GO:0003723
Psa2g0142 792 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 681 757 IPR000504 GO:0003723
Psa2g0142 792 MobiDBLite consensus disorder prediction 197 211 - -
Psa2g0142 792 SUPERFAMILY RNA-binding domain, RBD 458 545 IPR035979 GO:0003676
Psa2g0142 792 MobiDBLite consensus disorder prediction 197 218 - -
Psa2g0142 792 CDD RRM1_MRD1 32 105 - -
Psa2g0142 792 MobiDBLite consensus disorder prediction 114 151 - -
Psa2g0142 792 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 408 IPR000504 GO:0003723
Psa2g0142 792 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 461 533 IPR000504 GO:0003723
Psa2g0142 792 CDD RRM4_RBM19_RRM3_MRD1 461 532 - -
Psa2g0142 792 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 318 343 IPR000504 GO:0003723
Psa2g0142 792 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 683 750 IPR000504 GO:0003723
Psa2g0142 792 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 99 IPR000504 GO:0003723
Psa2g0142 792 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 466 524 IPR000504 GO:0003723
Psa2g0142 792 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 583 657 IPR000504 GO:0003723
Psa2g0142 792 Gene3D - 232 386 IPR012677 -
Psa2g0142 792 Gene3D - 556 673 IPR012677 -
Psa2g0142 792 SUPERFAMILY RNA-binding domain, RBD 255 383 IPR035979 GO:0003676
Psa2g0142 792 Gene3D - 454 555 IPR012677 -
Psa2g0142 792 Gene3D - 674 784 IPR012677 -
Psa2g0142 792 MobiDBLite consensus disorder prediction 252 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0142 Psa-Chr2 5230997 5236945 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0142 583 773 Eukaryotic Initiation Factors Gene Family AT4G34110 29.208 1.08e-14 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0142 K14787 - gmx:100798742 856.67