Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0102 ATGTCTGTGAATGGAAGAGTTTCTGCTTCAAATGGAAGATTGTCACAGAAAATCAAATCTAGGAAAGGAAATGAGTCTTCTTTCCATGTGTCTAATTCTACTTGGACATGTTTGTGGAAACCATTTCTCTTTTGGGTTTTTGGTGTTTTTGTTGCTATAGGGAGTGTTTGGTTTATCTTTAATAGTTTCAATTACAAGCCTTTGACTAATGAAGCAGCTTGTGAAAAAAGTACACAAACGTTGCTACAACGTTACAATGTCAGTAGGAAACAGCTTCATGCTTTGGCTTCCTTGTTCTCTGGATCAGATCAGATTTTGTCCAACTGTATTGATGAAAAAAGGATTCAAATACTGTTAAGCAGTGGCATAGTCAACACTCCACATTCAATTTGTCCGAAGAGTCAAGAGTTTTCGAAGGAGAGTCAATGTGTTGCAGAGTCTCTAGAAGAATGTCCGGTTCGTGATGATTTCGTTGAGGCAAGGACTGGATTATCATTCTCTTTCCCATGGAAAACATATGTGACTTTGGATTTCGTGCCGTGGTCCAAGTTGGTTAATGTTTTGCTCTGTTGGATCGTTATTGTAGTTATAATGTCACTCAAGTTGTCTGGCTTGTGTTTAATAAGTAGGAGTCCGAGGCAGAAGCTACGTCAGGATAATCGAGCTGGTCAACAAAAGCCGCTTCAACATATTACGCATGGTCATTCGAAGGCTGCTGGGAGGTGGAGAAAAAAGTTGCTAGTTATTTTCGTCTCACTTGGAATTGTCGGTTCCGCGTGGCTATTTTGGCACCTGAATTCTGATATTGTGCAAAGAAGAGAAGAAATGCTTGCCACTATGTGTGACGAGCGAGCCGGTATGCTGCAAGATCAATTTAACGTGAGCTTGAACCATGTTCACGCTCTCGCTATTCTCGTGTCTACATTTCATCATGGTAAACATCCTTCTGCAGTCGACCAGAATATTTTTGGAGAATATACCGAGAGTTCTGCATTTGAGAGACCACTTACGAGTGGTGTTGCTTATGCTTTGAAAGTTCTGCATTCCGATAGGATGAATTTTGAGAAGCAGCATGGGTGGACAATTAAGAAAATGGAAACCGAGAACGAGGCATTAGTTCAAGATTGTATTCCGGAAAGCTTGGATCCGGCGCCCATTCAAGATGAATATGCACCAGTTATATTTGCTCAAGAAACCGTTTCTCATATTGTATCTATTGACATGATGTCAGGGAAGGAAGATCGGGAGAATATTTTGCGAGCAAGGGCGTCCGGAAAGGGTGTTCTGACATCCCCGTTTAAACTACTAAAGTCCAATCACTTAGGTGTTGTACTTACGTTTGCTGTCTATGGCTCTAAGCTTCCTCCAGATGCTACACCCAAACAGCGTACTGAAGCTACTGTCGGGTATTTGGGCGCATCTTATGATGTTCCGTCATTGGTAGACAAGCTTCTTCACCAACTTGCCAGCAAGCAAACTATTGTTGTTAATGTTTACGACACAACTAATGCATCTGCGCATATTACAATGTATGGTACCGATGTTGTTGATACTGGCCTACTACACGTAAGCGGTCTAGATTTTGGGGATCCGCTACGAAAACATGAAATGCACTGCAGGTTCAAGCATATGCCTCCATTTCCTTGGACAGCAATCAATGCATCCGTGGGAGTTTTTGTTATTACCTTGCTTCTAGGACATATATTTCATGCGGCAATAAATCGAATAGCTCAAGTAGAGGATGACTATCGTCGGATGAAAGAGCTCATGGTTCGTGCTGAGGCTGCAGATGTCGCAAAATCTCAGTTTCTTGCGACAGTTTCGCATGAGATCAGGACTCCAATGAATGGTGTTTTAGGTATGCTGCAAATGTTGATGGATACTGACCTTGATGACAATCAGATCGATTGTGCCCAAACTGCTCACGATAGTGGTAAAGATCTTATATCGGTCATAAGTGAGGTTCTCGAACAAGCTAAGATCGAGGCCGGAAGGCTTGAACTCGAAGCTGTAGCTTTTCATCCACATGCTATTCTCGATGAAGTTCTATCACATTTCTCTGAAAAATCCATTGAAAAACGAATCGAGTTGGCTGTTTATGCGTCCAAACAAGTACCTCAAGTTGTCATCGGTGATCCTAAGCGCTTCCGGCAAATAATTACCAATCTTGTCGGAAACTCACTTAAGTTCACTCACGATAAAGGACATGTTTTTGTCTCGATTCATCTTTCAAATGAAGTGAAGAATCCACTTCATATCATGGATCCAGTGCTGAGAGAAGGCTTAAACACGAGTCACGACATATCGGAAAGAACATGTAACACGTTGAGTGGATTTCCGGTAGGCAACAGATGGGAAAGCTGGGAAGATTTTAAAAAGTTAAATTTGGCAGAAGAGTCTGAAACTGTTCAACTACTAGTAACGGTTGAGGACACTGGTATAGGAATTCCGACCGATGCACAAAGCCGGATATTCACGCCTTTTATGCAGGCTGATAGTTCTACATCTCGAACATACGGTGGAACTGGAATAGGATTGAGCATTAGTAAATGTCTAGTTGACCTCATGGGAGGAGAAATTGGATTTGTAAGTGAGCCTGAAATCGGAAGTACTTTTTCGTTTACTGGAAATTTCAGAAAAGGAGAAACCGAATCTCGTGATGGAAAGTTGCAGAAGAACAGTCCTGAGTTCCAAGGATTGAAAGCTTTAGTAGTAGATAGAAGAAAAATCCGAGCCGAGGTTACACGATATCACCTGCAGAGGTTAGGGATGTCTGTGGATGTAAATTTTTGTCTATCCGAAACTTGTAACTCAAGTATGTCAACACGACTGGCCATGATTCTTATAGAGAAGGATTGTTGGGACAAGGAAAGTAGTAGCTTATACGAAATCAAGAAACACGTACATAATGGCATCAAAGAGGACCCGTTAAAGTTTTCGAAGATTTTTCTCCTGTCCACCCATCTAAGCTTCGGCGAGCGCAACGAGCTGAAGTCAGATGGTATCGTAGATGATATACTAATGAAGCCTCTTTGGCTAAATGCTTTGATTCGATACTACAGAGAATCCCTTGGAGTTGGGAGAAAACAAATCACTAGAAAGAAAGTATCCAAACTTGGAAATTTGTTAATACACAAACGAATTTTGGTGGTTGATGATAATGCGGTGAACAGAAAAGTTGCAGAAGGTGTTCTGCGGAAATACGGGGCCGTAGTTACTTGTGTTGAGGGTGGTAAGGCTGCTCTAAAGATGCTTAAACCACCGCATAATTTTGATGCTTGTTTCATGGATCTCCAAATGCCAGAAATGGACGGTTTTGAGGTGACGAGGCAAATCCGGTATATGGAAAACGAGGTAAATGAAAAAATCGCTTGCGGGCAAGCATTGGCAGAGATGTTTGGCAACAATTCTCATTGGCACACTCCAATATTAGCTATGACAGCTCATGTAACTCCGGCGTCAAATGAAGAATGCAAAAAATGTGGGATGGACGACTACGTGTCAAAGCCATTCGAAGAAGAACAACTCTATATGGCAGTTGCACGAGTCTTCAACTTCGGGTCATAG 3567 0.4188 MSVNGRVSASNGRLSQKIKSRKGNESSFHVSNSTWTCLWKPFLFWVFGVFVAIGSVWFIFNSFNYKPLTNEAACEKSTQTLLQRYNVSRKQLHALASLFSGSDQILSNCIDEKRIQILLSSGIVNTPHSICPKSQEFSKESQCVAESLEECPVRDDFVEARTGLSFSFPWKTYVTLDFVPWSKLVNVLLCWIVIVVIMSLKLSGLCLISRSPRQKLRQDNRAGQQKPLQHITHGHSKAAGRWRKKLLVIFVSLGIVGSAWLFWHLNSDIVQRREEMLATMCDERAGMLQDQFNVSLNHVHALAILVSTFHHGKHPSAVDQNIFGEYTESSAFERPLTSGVAYALKVLHSDRMNFEKQHGWTIKKMETENEALVQDCIPESLDPAPIQDEYAPVIFAQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYGSKLPPDATPKQRTEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTNASAHITMYGTDVVDTGLLHVSGLDFGDPLRKHEMHCRFKHMPPFPWTAINASVGVFVITLLLGHIFHAAINRIAQVEDDYRRMKELMVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDDNQIDCAQTAHDSGKDLISVISEVLEQAKIEAGRLELEAVAFHPHAILDEVLSHFSEKSIEKRIELAVYASKQVPQVVIGDPKRFRQIITNLVGNSLKFTHDKGHVFVSIHLSNEVKNPLHIMDPVLREGLNTSHDISERTCNTLSGFPVGNRWESWEDFKKLNLAEESETVQLLVTVEDTGIGIPTDAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPEIGSTFSFTGNFRKGETESRDGKLQKNSPEFQGLKALVVDRRKIRAEVTRYHLQRLGMSVDVNFCLSETCNSSMSTRLAMILIEKDCWDKESSSLYEIKKHVHNGIKEDPLKFSKIFLLSTHLSFGERNELKSDGIVDDILMKPLWLNALIRYYRESLGVGRKQITRKKVSKLGNLLIHKRILVVDDNAVNRKVAEGVLRKYGAVVTCVEGGKAALKMLKPPHNFDACFMDLQMPEMDGFEVTRQIRYMENEVNEKIACGQALAEMFGNNSHWHTPILAMTAHVTPASNEECKKCGMDDYVSKPFEEEQLYMAVARVFNFGS* 1189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0102 1188 Gene3D - 567 662 - -
Psa2g0102 1188 Pfam Response regulator receiver domain 1048 1180 IPR001789 GO:0000160
Psa2g0102 1188 Gene3D - 663 881 IPR036890 -
Psa2g0102 1188 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 711 875 IPR003594 -
Psa2g0102 1188 Gene3D - 1042 1186 - -
Psa2g0102 1188 Pfam CHASE domain 317 511 IPR006189 -
Psa2g0102 1188 CDD REC_hyHK_CKI1_RcsC-like 1048 1180 - -
Psa2g0102 1188 PRINTS Bacterial sensor protein C-terminal signature 805 819 IPR004358 GO:0016310|GO:0016772
Psa2g0102 1188 PRINTS Bacterial sensor protein C-terminal signature 823 833 IPR004358 GO:0016310|GO:0016772
Psa2g0102 1188 PRINTS Bacterial sensor protein C-terminal signature 840 858 IPR004358 GO:0016310|GO:0016772
Psa2g0102 1188 ProSiteProfiles CHASE domain profile. 314 538 IPR006189 -
Psa2g0102 1188 Coils Coil 576 596 - -
Psa2g0102 1188 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 585 665 IPR036097 GO:0000155|GO:0007165
Psa2g0102 1188 SMART HisKA_10 599 664 IPR003661 GO:0000155|GO:0007165
Psa2g0102 1188 Gene3D CHASE domain 318 544 IPR042240 -
Psa2g0102 1188 PANTHER TWO-COMPONENT HISTIDINE KINASE 232 1185 - -
Psa2g0102 1188 Pfam His Kinase A (phospho-acceptor) domain 599 664 IPR003661 GO:0000155|GO:0007165
Psa2g0102 1188 ProSiteProfiles Response regulatory domain profile. 1047 1184 IPR001789 GO:0000160
Psa2g0102 1188 Gene3D - 265 317 - -
Psa2g0102 1188 SUPERFAMILY CheY-like 1046 1185 IPR011006 -
Psa2g0102 1188 CDD HATPase_EvgS-ArcB-TorS-like 716 875 - -
Psa2g0102 1188 PANTHER HISTIDINE KINASE 2 232 1185 - -
Psa2g0102 1188 SMART CHASE_2 314 513 IPR006189 -
Psa2g0102 1188 SMART REC_2 1046 1180 IPR001789 GO:0000160
Psa2g0102 1188 CDD HisKA 599 660 IPR003661 GO:0000155|GO:0007165
Psa2g0102 1188 ProSiteProfiles Histidine kinase domain profile. 606 880 IPR005467 -
Psa2g0102 1188 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 654 875 IPR036890 -
Psa2g0102 1188 SMART HKATPase_4 711 880 IPR003594 -
Psa2g0102 1188 SUPERFAMILY CheY-like 896 1023 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0102 Psa-Chr2 3520399 3526313 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0102 41 1184 Miscellaneous Gene Families AT5G35750 58.026 0.0 1292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa2g0102 CHASE 7.9e-33 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0102 K14489 - gmx:100805107 1763.04