Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa2g0102 | ATGTCTGTGAATGGAAGAGTTTCTGCTTCAAATGGAAGATTGTCACAGAAAATCAAATCTAGGAAAGGAAATGAGTCTTCTTTCCATGTGTCTAATTCTACTTGGACATGTTTGTGGAAACCATTTCTCTTTTGGGTTTTTGGTGTTTTTGTTGCTATAGGGAGTGTTTGGTTTATCTTTAATAGTTTCAATTACAAGCCTTTGACTAATGAAGCAGCTTGTGAAAAAAGTACACAAACGTTGCTACAACGTTACAATGTCAGTAGGAAACAGCTTCATGCTTTGGCTTCCTTGTTCTCTGGATCAGATCAGATTTTGTCCAACTGTATTGATGAAAAAAGGATTCAAATACTGTTAAGCAGTGGCATAGTCAACACTCCACATTCAATTTGTCCGAAGAGTCAAGAGTTTTCGAAGGAGAGTCAATGTGTTGCAGAGTCTCTAGAAGAATGTCCGGTTCGTGATGATTTCGTTGAGGCAAGGACTGGATTATCATTCTCTTTCCCATGGAAAACATATGTGACTTTGGATTTCGTGCCGTGGTCCAAGTTGGTTAATGTTTTGCTCTGTTGGATCGTTATTGTAGTTATAATGTCACTCAAGTTGTCTGGCTTGTGTTTAATAAGTAGGAGTCCGAGGCAGAAGCTACGTCAGGATAATCGAGCTGGTCAACAAAAGCCGCTTCAACATATTACGCATGGTCATTCGAAGGCTGCTGGGAGGTGGAGAAAAAAGTTGCTAGTTATTTTCGTCTCACTTGGAATTGTCGGTTCCGCGTGGCTATTTTGGCACCTGAATTCTGATATTGTGCAAAGAAGAGAAGAAATGCTTGCCACTATGTGTGACGAGCGAGCCGGTATGCTGCAAGATCAATTTAACGTGAGCTTGAACCATGTTCACGCTCTCGCTATTCTCGTGTCTACATTTCATCATGGTAAACATCCTTCTGCAGTCGACCAGAATATTTTTGGAGAATATACCGAGAGTTCTGCATTTGAGAGACCACTTACGAGTGGTGTTGCTTATGCTTTGAAAGTTCTGCATTCCGATAGGATGAATTTTGAGAAGCAGCATGGGTGGACAATTAAGAAAATGGAAACCGAGAACGAGGCATTAGTTCAAGATTGTATTCCGGAAAGCTTGGATCCGGCGCCCATTCAAGATGAATATGCACCAGTTATATTTGCTCAAGAAACCGTTTCTCATATTGTATCTATTGACATGATGTCAGGGAAGGAAGATCGGGAGAATATTTTGCGAGCAAGGGCGTCCGGAAAGGGTGTTCTGACATCCCCGTTTAAACTACTAAAGTCCAATCACTTAGGTGTTGTACTTACGTTTGCTGTCTATGGCTCTAAGCTTCCTCCAGATGCTACACCCAAACAGCGTACTGAAGCTACTGTCGGGTATTTGGGCGCATCTTATGATGTTCCGTCATTGGTAGACAAGCTTCTTCACCAACTTGCCAGCAAGCAAACTATTGTTGTTAATGTTTACGACACAACTAATGCATCTGCGCATATTACAATGTATGGTACCGATGTTGTTGATACTGGCCTACTACACGTAAGCGGTCTAGATTTTGGGGATCCGCTACGAAAACATGAAATGCACTGCAGGTTCAAGCATATGCCTCCATTTCCTTGGACAGCAATCAATGCATCCGTGGGAGTTTTTGTTATTACCTTGCTTCTAGGACATATATTTCATGCGGCAATAAATCGAATAGCTCAAGTAGAGGATGACTATCGTCGGATGAAAGAGCTCATGGTTCGTGCTGAGGCTGCAGATGTCGCAAAATCTCAGTTTCTTGCGACAGTTTCGCATGAGATCAGGACTCCAATGAATGGTGTTTTAGGTATGCTGCAAATGTTGATGGATACTGACCTTGATGACAATCAGATCGATTGTGCCCAAACTGCTCACGATAGTGGTAAAGATCTTATATCGGTCATAAGTGAGGTTCTCGAACAAGCTAAGATCGAGGCCGGAAGGCTTGAACTCGAAGCTGTAGCTTTTCATCCACATGCTATTCTCGATGAAGTTCTATCACATTTCTCTGAAAAATCCATTGAAAAACGAATCGAGTTGGCTGTTTATGCGTCCAAACAAGTACCTCAAGTTGTCATCGGTGATCCTAAGCGCTTCCGGCAAATAATTACCAATCTTGTCGGAAACTCACTTAAGTTCACTCACGATAAAGGACATGTTTTTGTCTCGATTCATCTTTCAAATGAAGTGAAGAATCCACTTCATATCATGGATCCAGTGCTGAGAGAAGGCTTAAACACGAGTCACGACATATCGGAAAGAACATGTAACACGTTGAGTGGATTTCCGGTAGGCAACAGATGGGAAAGCTGGGAAGATTTTAAAAAGTTAAATTTGGCAGAAGAGTCTGAAACTGTTCAACTACTAGTAACGGTTGAGGACACTGGTATAGGAATTCCGACCGATGCACAAAGCCGGATATTCACGCCTTTTATGCAGGCTGATAGTTCTACATCTCGAACATACGGTGGAACTGGAATAGGATTGAGCATTAGTAAATGTCTAGTTGACCTCATGGGAGGAGAAATTGGATTTGTAAGTGAGCCTGAAATCGGAAGTACTTTTTCGTTTACTGGAAATTTCAGAAAAGGAGAAACCGAATCTCGTGATGGAAAGTTGCAGAAGAACAGTCCTGAGTTCCAAGGATTGAAAGCTTTAGTAGTAGATAGAAGAAAAATCCGAGCCGAGGTTACACGATATCACCTGCAGAGGTTAGGGATGTCTGTGGATGTAAATTTTTGTCTATCCGAAACTTGTAACTCAAGTATGTCAACACGACTGGCCATGATTCTTATAGAGAAGGATTGTTGGGACAAGGAAAGTAGTAGCTTATACGAAATCAAGAAACACGTACATAATGGCATCAAAGAGGACCCGTTAAAGTTTTCGAAGATTTTTCTCCTGTCCACCCATCTAAGCTTCGGCGAGCGCAACGAGCTGAAGTCAGATGGTATCGTAGATGATATACTAATGAAGCCTCTTTGGCTAAATGCTTTGATTCGATACTACAGAGAATCCCTTGGAGTTGGGAGAAAACAAATCACTAGAAAGAAAGTATCCAAACTTGGAAATTTGTTAATACACAAACGAATTTTGGTGGTTGATGATAATGCGGTGAACAGAAAAGTTGCAGAAGGTGTTCTGCGGAAATACGGGGCCGTAGTTACTTGTGTTGAGGGTGGTAAGGCTGCTCTAAAGATGCTTAAACCACCGCATAATTTTGATGCTTGTTTCATGGATCTCCAAATGCCAGAAATGGACGGTTTTGAGGTGACGAGGCAAATCCGGTATATGGAAAACGAGGTAAATGAAAAAATCGCTTGCGGGCAAGCATTGGCAGAGATGTTTGGCAACAATTCTCATTGGCACACTCCAATATTAGCTATGACAGCTCATGTAACTCCGGCGTCAAATGAAGAATGCAAAAAATGTGGGATGGACGACTACGTGTCAAAGCCATTCGAAGAAGAACAACTCTATATGGCAGTTGCACGAGTCTTCAACTTCGGGTCATAG | 3567 | 0.4188 | MSVNGRVSASNGRLSQKIKSRKGNESSFHVSNSTWTCLWKPFLFWVFGVFVAIGSVWFIFNSFNYKPLTNEAACEKSTQTLLQRYNVSRKQLHALASLFSGSDQILSNCIDEKRIQILLSSGIVNTPHSICPKSQEFSKESQCVAESLEECPVRDDFVEARTGLSFSFPWKTYVTLDFVPWSKLVNVLLCWIVIVVIMSLKLSGLCLISRSPRQKLRQDNRAGQQKPLQHITHGHSKAAGRWRKKLLVIFVSLGIVGSAWLFWHLNSDIVQRREEMLATMCDERAGMLQDQFNVSLNHVHALAILVSTFHHGKHPSAVDQNIFGEYTESSAFERPLTSGVAYALKVLHSDRMNFEKQHGWTIKKMETENEALVQDCIPESLDPAPIQDEYAPVIFAQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYGSKLPPDATPKQRTEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTNASAHITMYGTDVVDTGLLHVSGLDFGDPLRKHEMHCRFKHMPPFPWTAINASVGVFVITLLLGHIFHAAINRIAQVEDDYRRMKELMVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDDNQIDCAQTAHDSGKDLISVISEVLEQAKIEAGRLELEAVAFHPHAILDEVLSHFSEKSIEKRIELAVYASKQVPQVVIGDPKRFRQIITNLVGNSLKFTHDKGHVFVSIHLSNEVKNPLHIMDPVLREGLNTSHDISERTCNTLSGFPVGNRWESWEDFKKLNLAEESETVQLLVTVEDTGIGIPTDAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPEIGSTFSFTGNFRKGETESRDGKLQKNSPEFQGLKALVVDRRKIRAEVTRYHLQRLGMSVDVNFCLSETCNSSMSTRLAMILIEKDCWDKESSSLYEIKKHVHNGIKEDPLKFSKIFLLSTHLSFGERNELKSDGIVDDILMKPLWLNALIRYYRESLGVGRKQITRKKVSKLGNLLIHKRILVVDDNAVNRKVAEGVLRKYGAVVTCVEGGKAALKMLKPPHNFDACFMDLQMPEMDGFEVTRQIRYMENEVNEKIACGQALAEMFGNNSHWHTPILAMTAHVTPASNEECKKCGMDDYVSKPFEEEQLYMAVARVFNFGS* | 1189 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa2g0102 | 1188 | Gene3D | - | 567 | 662 | - | - | |
Psa2g0102 | 1188 | Pfam | Response regulator receiver domain | 1048 | 1180 | IPR001789 | GO:0000160 | |
Psa2g0102 | 1188 | Gene3D | - | 663 | 881 | IPR036890 | - | |
Psa2g0102 | 1188 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 711 | 875 | IPR003594 | - | |
Psa2g0102 | 1188 | Gene3D | - | 1042 | 1186 | - | - | |
Psa2g0102 | 1188 | Pfam | CHASE domain | 317 | 511 | IPR006189 | - | |
Psa2g0102 | 1188 | CDD | REC_hyHK_CKI1_RcsC-like | 1048 | 1180 | - | - | |
Psa2g0102 | 1188 | PRINTS | Bacterial sensor protein C-terminal signature | 805 | 819 | IPR004358 | GO:0016310|GO:0016772 | |
Psa2g0102 | 1188 | PRINTS | Bacterial sensor protein C-terminal signature | 823 | 833 | IPR004358 | GO:0016310|GO:0016772 | |
Psa2g0102 | 1188 | PRINTS | Bacterial sensor protein C-terminal signature | 840 | 858 | IPR004358 | GO:0016310|GO:0016772 | |
Psa2g0102 | 1188 | ProSiteProfiles | CHASE domain profile. | 314 | 538 | IPR006189 | - | |
Psa2g0102 | 1188 | Coils | Coil | 576 | 596 | - | - | |
Psa2g0102 | 1188 | SUPERFAMILY | Homodimeric domain of signal transducing histidine kinase | 585 | 665 | IPR036097 | GO:0000155|GO:0007165 | |
Psa2g0102 | 1188 | SMART | HisKA_10 | 599 | 664 | IPR003661 | GO:0000155|GO:0007165 | |
Psa2g0102 | 1188 | Gene3D | CHASE domain | 318 | 544 | IPR042240 | - | |
Psa2g0102 | 1188 | PANTHER | TWO-COMPONENT HISTIDINE KINASE | 232 | 1185 | - | - | |
Psa2g0102 | 1188 | Pfam | His Kinase A (phospho-acceptor) domain | 599 | 664 | IPR003661 | GO:0000155|GO:0007165 | |
Psa2g0102 | 1188 | ProSiteProfiles | Response regulatory domain profile. | 1047 | 1184 | IPR001789 | GO:0000160 | |
Psa2g0102 | 1188 | Gene3D | - | 265 | 317 | - | - | |
Psa2g0102 | 1188 | SUPERFAMILY | CheY-like | 1046 | 1185 | IPR011006 | - | |
Psa2g0102 | 1188 | CDD | HATPase_EvgS-ArcB-TorS-like | 716 | 875 | - | - | |
Psa2g0102 | 1188 | PANTHER | HISTIDINE KINASE 2 | 232 | 1185 | - | - | |
Psa2g0102 | 1188 | SMART | CHASE_2 | 314 | 513 | IPR006189 | - | |
Psa2g0102 | 1188 | SMART | REC_2 | 1046 | 1180 | IPR001789 | GO:0000160 | |
Psa2g0102 | 1188 | CDD | HisKA | 599 | 660 | IPR003661 | GO:0000155|GO:0007165 | |
Psa2g0102 | 1188 | ProSiteProfiles | Histidine kinase domain profile. | 606 | 880 | IPR005467 | - | |
Psa2g0102 | 1188 | SUPERFAMILY | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 654 | 875 | IPR036890 | - | |
Psa2g0102 | 1188 | SMART | HKATPase_4 | 711 | 880 | IPR003594 | - | |
Psa2g0102 | 1188 | SUPERFAMILY | CheY-like | 896 | 1023 | IPR011006 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa2g0102 | Psa-Chr2 | 3520399 | 3526313 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa2g0102 | 41 | 1184 | Miscellaneous Gene Families | AT5G35750 | 58.026 | 0.0 | 1292 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | Others | Psa2g0102 | CHASE | 7.9e-33 | CL0165 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa2g0102 | K14489 | - | gmx:100805107 | 1763.04 |