Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0095 ATGCAATCAGATAGTGGCAAGTTATTTATCGGTGGAATATCATGGGACACCAACGAAGAGCGACTCAGGGAGTATTTTAGTACTTATGGGGAGGTTAAGGAAGCCGTGATCATGAAGGATCGGACAACTGGTAGAGCACGTGGATTTGGTTTTGTTGTTTTCATTGATCCGGCTGTTGCAGAGATTGTTATCCAGGAGAAGCACAACATCGACGGAAGGATGGTTGAGGCGAAGAAAGCTGTTCCTAGAGATGATCAAAACGTATTGAGTAGAACCAGTGGCAGCATCCATGGTTCTCCCGGTCAAGGTCGCACGAGAAAGATATTTGTTGGAGGTTTAGCTTCTACAGTGACAGAGAGTGATTTCAAGAAATACTTTGATCAGTTTGGGACTATAACAGATGTTGTAGTAATGTACGATCACAACACTCAGAGGCCAAGAGGATTTGGATTTATCACGTATGATTCCGAAGAAGCTGTTGACCAGGTCTTACTTAAGACGTTTCATGAATTGAACGGTAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAGTTATCGCCAGGACCTACCCGCTCACCTCTCGGTGGATACAACTATGGTCTGAGTAGGGTTAATAGTTTCTTGAATGGCTTCAATCAGGGGTATAGTCCGAGTGCTGTCGGAGGCTATGGACTCCAGATGGATGGTAGGTTCAGTCCGGTTGCTAGTGCTAGAAATGCATTTGCACCATTTGGATCTGGTTATGGAATGGGTATGAATTTCGAGCCGGGTTTGAGTCCTGGATTTAGAGGAAATGCAAATTTCAACGGCAATCTTAGCTATGGACGGGGCTTGAATCCATACTTTATCGGCAGCTCCAATAGGTTTGGAAATCCTGTTGGATATGAAAGTGGTAACGGAGGAAACAATTCTTTCTTCAGTTCTGTTACTCGAAATTTGTGGGGGAATGGGAGCCTTAACTATGGGACAAATTCTGCGAATTCCAATGCATACATTGGATCGGGCAGTGGAAATGTTGGAGGAAATGCATTTGGCAATACTGGAGTCAACTGGAGTTCTTCGCCGATTTCTGGACACGGGGGAGGGAACAATGTGTCACCGGGTAGTGGCAACCTCGGATACGGAGGTGGCAACAACGGTTACGGATTGGGGACTGAAGGGTATGGAAGAAGCAGCGGTTCCTCTCTTGCACCAACATCTTCATACTCTACATCAAATGGTGGTGGTGGTGTTGATGGTTCTTTCGGTGATTTTTACAGCAATAGTTCGGTCTATGGGGACTCCACTTGGCGATCTGCAAATTCTGAACGAGATGGATCTGGTCCCTTCGGTTACGGACTCGGTGGTGCAGCTTCAGATGTTTCTGTCAAGACTTCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAAAGGCAGCCAAATAGGGGAATTACTACATAG 1443 0.456 MQSDSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVAEIVIQEKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGQGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKRAVPKELSPGPTRSPLGGYNYGLSRVNSFLNGFNQGYSPSAVGGYGLQMDGRFSPVASARNAFAPFGSGYGMGMNFEPGLSPGFRGNANFNGNLSYGRGLNPYFIGSSNRFGNPVGYESGNGGNNSFFSSVTRNLWGNGSLNYGTNSANSNAYIGSGSGNVGGNAFGNTGVNWSSSPISGHGGGNNVSPGSGNLGYGGGNNGYGLGTEGYGRSSGSSLAPTSSYSTSNGGGGVDGSFGDFYSNSSVYGDSTWRSANSERDGSGPFGYGLGGAASDVSVKTSPGYVGGYTVNKRQPNRGITT* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0095 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Psa2g0095 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Psa2g0095 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Psa2g0095 480 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 479 - -
Psa2g0095 480 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 479 - -
Psa2g0095 480 SMART rrm1_1 107 179 IPR000504 GO:0003723
Psa2g0095 480 SMART rrm1_1 7 78 IPR000504 GO:0003723
Psa2g0095 480 Gene3D - 103 189 IPR012677 -
Psa2g0095 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Psa2g0095 480 Gene3D - 4 88 IPR012677 -
Psa2g0095 480 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Psa2g0095 480 SUPERFAMILY RNA-binding domain, RBD 3 104 IPR035979 GO:0003676
Psa2g0095 480 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Psa2g0095 480 SUPERFAMILY RNA-binding domain, RBD 104 203 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0095 Psa-Chr2 2894088 2898534 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0095 8 268 Eukaryotic Initiation Factors Gene Family AT1G71770 28.431 5.93e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0095 K14411 - gmx:100795907 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g0095 2 2894088 2898534 Psa2g0095 2 2894088 2898534 ECH
Psa5g2452 5 186954944 186958797 Psa2g0095 2 2894088 2898534 PCT