Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0094 ATGGGACCATCCATAGAAATTTGGGATCTTGATGTTATTGACGAGGTAGAACCATGTGTGGTGTTGGGTGGCAAAGAGGAAAGCAAAAAGGGGAAAAATGGGAAAAAGAAATCAATAAAATACAGAGAGGACAGTCACACTGACTCAGTACTTGGTCTTGCTTGGAACAAGGAGTTCAGTAATCTACTTGCAAGTGCTAGTGCTGACAAGAGAGTAAAAATTTGGGACGTCGTCGCTGGAAAGTGTACTCTTACAATGGAGCATCACACTGACAAGGTTCAAGCAGTTGCTTGGAATCATCATAGACAACATGTCCTTCTTAGTGGCTCGTTTGATCAAACGGTTGCCTTGAAGGATGTAAGGAATCCGTCGCATTCAGGCTGTATGTGGTCAGTTAGTGCTGATGTAGAGAGCTTGGCGTGGGATCCACACGCTGAGCACCTTTTTACGGTGAGTCTTGAAGATGGTACCGTCAAGTGTTTTGATGTCCGGAATGCCATGTCCAATGTCACATCTGAGCATAGTGCGACTTTTACACTTCATGCACACGACAAATCTGTTACCTCCGTAGCCTATAATATGTCAGCACCTAATCTTCTTGCTACTGGATCCATGGATAAAACGGTAAAACTATGGGATTTGTCTAACAACCAACCATCTTGTGTTGCAACCAAAGAACCAAAAGCTGGGTCTGTCTTTTGTATCTCTTTCGCAGATGACAACCCATTCTTGTTGGCAATAGGAGGCTCAAAGGGAAAATTAGAATTATGGGACACCTTAGCTAATGAAGGCGTCTCTCGAAGATACGAGAAGTACAGTAGGAACCAACCTCAATCCGGGGCCTGA 846 0.4409 MGPSIEIWDLDVIDEVEPCVVLGGKEESKKGKNGKKKSIKYREDSHTDSVLGLAWNKEFSNLLASASADKRVKIWDVVAGKCTLTMEHHTDKVQAVAWNHHRQHVLLSGSFDQTVALKDVRNPSHSGCMWSVSADVESLAWDPHAEHLFTVSLEDGTVKCFDVRNAMSNVTSEHSATFTLHAHDKSVTSVAYNMSAPNLLATGSMDKTVKLWDLSNNQPSCVATKEPKAGSVFCISFADDNPFLLAIGGSKGKLELWDTLANEGVSRRYEKYSRNQPQSGA* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0094 281 Pfam WD domain, G-beta repeat 134 162 IPR001680 GO:0005515
Psa2g0094 281 Pfam WD domain, G-beta repeat 230 258 IPR001680 GO:0005515
Psa2g0094 281 Pfam WD domain, G-beta repeat 178 213 IPR001680 GO:0005515
Psa2g0094 281 PANTHER PERIODIC TRYPTOPHAN PROTEIN 1 3 271 IPR044285 GO:0006364
Psa2g0094 281 PRINTS G protein beta WD-40 repeat signature 63 77 IPR020472 -
Psa2g0094 281 PRINTS G protein beta WD-40 repeat signature 200 214 IPR020472 -
Psa2g0094 281 PRINTS G protein beta WD-40 repeat signature 245 259 IPR020472 -
Psa2g0094 281 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 180 218 - -
Psa2g0094 281 SUPERFAMILY WD40 repeat-like 34 259 IPR036322 GO:0005515
Psa2g0094 281 ProSitePatterns Trp-Asp (WD) repeats signature. 200 214 IPR019775 -
Psa2g0094 281 Gene3D - 127 278 IPR015943 GO:0005515
Psa2g0094 281 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 3 271 - -
Psa2g0094 281 SMART WD40_4 122 162 IPR001680 GO:0005515
Psa2g0094 281 SMART WD40_4 79 119 IPR001680 GO:0005515
Psa2g0094 281 SMART WD40_4 34 76 IPR001680 GO:0005515
Psa2g0094 281 SMART WD40_4 218 258 IPR001680 GO:0005515
Psa2g0094 281 SMART WD40_4 173 213 IPR001680 GO:0005515
Psa2g0094 281 ProSiteProfiles Trp-Asp (WD) repeats profile. 43 85 IPR001680 GO:0005515
Psa2g0094 281 ProSitePatterns Trp-Asp (WD) repeats signature. 63 77 IPR019775 -
Psa2g0094 281 Gene3D - 2 126 IPR015943 GO:0005515
Psa2g0094 281 Pfam Anaphase-promoting complex subunit 4 WD40 domain 42 100 IPR024977 -
Psa2g0094 281 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 43 77 - -
Psa2g0094 281 ProSiteProfiles Trp-Asp (WD) repeats profile. 180 222 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0094 Psa-Chr2 2873151 2875688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0094 61 258 U-box Gene Family AT2G33340 25.604 1.20e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0094 K14791 - gmx:100807947 438.728