Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0048 ATGGCGGAACAACTACTCAACGGTAACGGTAACGGCAACACCGCCGTCACCGAGTTTCCCTGCAACGCCGACGGCGTTTGCATGGCGTGCAAACAGACGCCTCTTGAAACTGACTCGCTTTTCTGCAAAACTTGTGGATCAAGATGGCATGTGCCGTGTTTGCCTGTTGTTCCGGTTAGTGTTGTTGATTGGGAGTGTAGTGATTGTGTTCTACCCGTTGAGAATGCGGTTGCGTCTGCTCCGGCTCCGTCTGTTGCCGGCGATCTTGTTTCTGCGATACGTGCTATTGAGAATGATGATTCGCTTACTGATGTGGAGAAGGCGAAGAAACGTCAGGAGCTTGTTGGTGGATCGGTGAAGCCGGTTGAGGAGAATAACGCGACTAAGCGGAATGGTGTGATGGATATCTTTCATAGCGGTTTGAATTGTTCTACCTGTATGTTTTTGCTTGAGAGGCCTGTTACTACTCCATGTGGGCACAATTTCTGTTTGAAGTGTTTTCAAAAATGGGTTGGGCAAGGAAAGCGCACTTGCTCAAATTGTAGGACTGCAATTCCAGCCAAGATGGCGAGTAATCCAAGGATCAATGCTCAGTTGGCTATGGCAATTCGTATGGCCAAGTTGGCCAAATCGGAAAATGTTGGGGGAAGCTCTGCTCCAAAAGTTTATCATGTTGTTCATAATGATGAGCGCCCTGATCAATGCTACACAACTGAAAGAGCCAAGAAAACAGGCAAGGCTAATGCATGCAGTGGTAAAATCTTCGTGACAATTCCAAAAGACCATTTTGGACCGATCCTTGCTGAGAATGATCCAAACAGGAACCGCGGGGTTCTTGTTGGTGATACTTGGGAGGATAGGATGGAATGCAGGCAGTGGGGAGCTCATTTTCCTCATGTTGCTGGGATTGCTGGTCAGAGTAATCATGGTGCTCAATCTGTTGCTCTTTCTGGTGGGTATGTTGATGACGAAGACCATGGTGAGTGGTTCCTTTATACTGGTAGTGGTGGAAGGGATCTCAGTGGTAACAAACGTACCAACAAAAATCAGTCCTTTGATCAGCAGTTTGAGAACATGAATGAGGCTTTGAGAGTCAGCTGCAAAAAAGGCTATCCAGTTCGTGTTGTAAGGTCCCACAAGGAAAAACGTTCCAATTATGCACCTGAAGCTGGTGTGAGATATGATGGGGTTTATAGAATTGAGAAATGCTGGCGCAAAGTTGGACAGCAAGGTCACAAGGTTTGCAGGTACTTGTTTGTTAGGTGTGACAATGAGCCAGCCCCATGGACAAGTGACTTAACTGGTGACCGTCCCCGTAAGCTTCCTACCATCAAGGAGTTTAAAGGTGCAGTTGATGTAACTGAAAGAAAGGGTGACCCATCTTGGGACTTTGATGAGGAAAAGGGCTGCTGGTTGTGGAAGAAGCCTCCACCACTAAGTAAGAAGCCTATGAATGTTGTGGATCCTTTTGATCCAACAAAAATAAAAGTTGTCAAGCCAAAAGCACAAAAGGTGTCCTTTAAAATCAAGGACAGGCTATTGAAAGAGTTTGGTTGCAATATCTGTTGCAAGGTGTTGGCTTCCCCTCTCACTACACCTTGTGCTCACAACTTCTGCAAAGGTTGTCTGGAGGGTGCTTTTTCTGGCCAGAGTTATATCAGGAATAGGAACACTAAAAGTGGACGTACTTTGCGTACACAGAAGAACATCATGAAATGCCCTACCTGTTCAACCGATATAGCTGACTATCTCCAGAATCCACAGGTTAACCGGGAGATGATGGGTGTGATAGAATCACTGCAGCGTCAGGCTGAAGAAATGGCAGAGAGTGCTGAAGAATCAAGCACTAAAAGTGATGACAATCTAAAGCCAGAGGAGGAGAGTGATGTTTCAAAAGCCTCTGATTCAGGTGAAGAAGTCTTGGAAGTGATTAAGGAGAATGATGAGGAGGAGGAGCCTCCAAAGAAGAAGAGAAAAGGTGCTGGTGGCAAGGCAGTGGAGAATGTGGAAGAACCACCTATTGATGTGGCAGAAGTGGCTAGCAATGCGGTGGCTTGCAACTAA 2064 0.4637 MAEQLLNGNGNGNTAVTEFPCNADGVCMACKQTPLETDSLFCKTCGSRWHVPCLPVVPVSVVDWECSDCVLPVENAVASAPAPSVAGDLVSAIRAIENDDSLTDVEKAKKRQELVGGSVKPVEENNATKRNGVMDIFHSGLNCSTCMFLLERPVTTPCGHNFCLKCFQKWVGQGKRTCSNCRTAIPAKMASNPRINAQLAMAIRMAKLAKSENVGGSSAPKVYHVVHNDERPDQCYTTERAKKTGKANACSGKIFVTIPKDHFGPILAENDPNRNRGVLVGDTWEDRMECRQWGAHFPHVAGIAGQSNHGAQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKNQSFDQQFENMNEALRVSCKKGYPVRVVRSHKEKRSNYAPEAGVRYDGVYRIEKCWRKVGQQGHKVCRYLFVRCDNEPAPWTSDLTGDRPRKLPTIKEFKGAVDVTERKGDPSWDFDEEKGCWLWKKPPPLSKKPMNVVDPFDPTKIKVVKPKAQKVSFKIKDRLLKEFGCNICCKVLASPLTTPCAHNFCKGCLEGAFSGQSYIRNRNTKSGRTLRTQKNIMKCPTCSTDIADYLQNPQVNREMMGVIESLQRQAEEMAESAEESSTKSDDNLKPEEESDVSKASDSGEEVLEVIKENDEEEEPPKKKRKGAGGKAVENVEEPPIDVAEVASNAVACN* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0048 687 SUPERFAMILY FYVE/PHD zinc finger 18 73 IPR011011 -
Psa2g0048 687 SUPERFAMILY RING/U-box 134 190 - -
Psa2g0048 687 SUPERFAMILY RING/U-box 508 588 - -
Psa2g0048 687 SUPERFAMILY PUA domain-like 247 442 IPR015947 -
Psa2g0048 687 MobiDBLite consensus disorder prediction 605 641 - -
Psa2g0048 687 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 15 654 - -
Psa2g0048 687 SMART ring_2 143 181 IPR001841 -
Psa2g0048 687 SMART ring_2 27 69 IPR001841 -
Psa2g0048 687 SMART ring_2 519 576 IPR001841 -
Psa2g0048 687 MobiDBLite consensus disorder prediction 602 673 - -
Psa2g0048 687 Pfam Zinc finger, C3HC4 type (RING finger) 143 181 IPR018957 GO:0046872
Psa2g0048 687 ProSiteProfiles YDG domain profile. 273 421 IPR003105 -
Psa2g0048 687 Pfam SAD/SRA domain 276 424 IPR003105 -
Psa2g0048 687 Coils Coil 590 617 - -
Psa2g0048 687 ProSitePatterns Zinc finger RING-type signature. 534 543 IPR017907 -
Psa2g0048 687 Gene3D - 244 442 IPR036987 -
Psa2g0048 687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 78 IPR013083 -
Psa2g0048 687 ProSitePatterns Zinc finger PHD-type signature. 27 69 IPR019786 -
Psa2g0048 687 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 15 654 IPR045134 -
Psa2g0048 687 Pfam RING-type zinc-finger 519 560 IPR027370 -
Psa2g0048 687 ProSiteProfiles Zinc finger RING-type profile. 143 182 IPR001841 -
Psa2g0048 687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 506 630 IPR013083 -
Psa2g0048 687 ProSiteProfiles Zinc finger RING-type profile. 519 577 IPR001841 -
Psa2g0048 687 SMART PHD_3 26 70 IPR001965 -
Psa2g0048 687 MobiDBLite consensus disorder prediction 648 665 - -
Psa2g0048 687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 210 IPR013083 -
Psa2g0048 687 SMART G9a_1 268 425 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0048 Psa-Chr2 1607708 1612213 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0048 17 659 C2H2 Transcription Factor Family AT5G39550 57.055 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0048 K10638 - gmx:100786796 879.011