Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0038 ACACTGCAAAACAACAAACCCTCATTTTTCTTCAACCGTTCCAAGAAACAAACTCAAACTCAAACCCACACTCATGAACCCTTATACGAACGCTTGCGCCCCAGAACATTGGACGAGGTTGTTGGACAGGATCATCTTCTATCAGCAAATTCTATTCTCCGTTCCGCAATCCAACGCAATCGTTTACCTTCTATCCTCTTATGGGGTCCACCCGGCACAGGTAAAACCACTATCGCCAAAGCTATTGTCAATTCATCAACAACAACTTCAACTTTCTATCGTTTTGTCTCTTTATCTGCTGTTACTAGTGGTGTTAAAGATGTTAGAGAAGCTGTTGATGAAGCAAGAAAACTCAGACTCAAAACAAATCAAACTACTGTTCTTTTTGTGGATGAGGTTCATAGGTTTAATAAATCTCAGCAAGATTCTTTCTTACCTGTTATTGAAGATGGTAGCATTGTTTTCGTGGGTGCCACTACTGAAAACCCTTCTTTTCATTTGATCACACCCCTTTTGTCTCGTTGTCGTGTACTAATTCTTAACCCTCTTCAACCTCATCACCTCAGTTTGCTTCTTAAACGTGCTGCTACTGACAGAGACAAAGGATTGGTGAAAAGCCTTGGATTTGGTTCTGATTCTGGTTCTGGTTCTTCCCAAGTTAATGTCAGTGTTGGTGAAGATGCGGTTGATTTTATAACTAACAATTGTGACGGGGATGCTCGTGTTGCTTTGAATGTATTGGAGATTGCTGCTGTTACCGCAGCTGCTAGGGTACAATATGACAATGAAGAATGCAAGGATGCTGTTGTAGTTGCTGTTAGTGTAGAGGATGCGAAGGAGGCACTTCAAAGTAAGCATCTTGCATATGATAAAGCTGGGGAAGAACACTATAATTTGATCAGTGCATTGCACAAGTCTATGAGGGGAAGTGATGCTAATGCAGCGATTTATTGGCTGGCAAGAATGTTAAAAGGAGGTGAAGAGCCACTTTATATTGCTCGTAGGCTTGTACGGTTTGCAAGTGAGGATGTAGGTTTGGCTGATCCGGTAGCTCTTAATCAAGCTGTTTCTTGCTACCAAGCTTGTCATTTTATAGGAATGCCAGAGTGCAATGTGATTCTTGCACAATGTGTTGCTTACCTGGCTTTGGCTCCTAAGTCTATAGCGGTTTATAGAGCGATTGGAGATGCTGAGAAGGTAGTGAGGGAATCAGTTGGACAGAATGAAGGGGTGCCTCTTCATCTTAGGAATGCACCGACCAAGTTAATGAAGGAAGTTGGGTATGGGAAGGGATACATATACACTCCTGATAACCCTTCTGCAGCACAGAGCTTTTTGCCGTCCTCCCTTCAAGGGTTCAAATTCCTCCATTGGCCCGACAAGAATCTCTCCAAATCTGATGGATGA 1407 0.4264 TLQNNKPSFFFNRSKKQTQTQTHTHEPLYERLRPRTLDEVVGQDHLLSANSILRSAIQRNRLPSILLWGPPGTGKTTIAKAIVNSSTTTSTFYRFVSLSAVTSGVKDVREAVDEARKLRLKTNQTTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLILNPLQPHHLSLLLKRAATDRDKGLVKSLGFGSDSGSGSSQVNVSVGEDAVDFITNNCDGDARVALNVLEIAAVTAAARVQYDNEECKDAVVVAVSVEDAKEALQSKHLAYDKAGEEHYNLISALHKSMRGSDANAAIYWLARMLKGGEEPLYIARRLVRFASEDVGLADPVALNQAVSCYQACHFIGMPECNVILAQCVAYLALAPKSIAVYRAIGDAEKVVRESVGQNEGVPLHLRNAPTKLMKEVGYGKGYIYTPDNPSAAQSFLPSSLQGFKFLHWPDKNLSKSDG* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0038 468 MobiDBLite consensus disorder prediction 1 25 - -
Psa2g0038 468 Pfam AAA C-terminal domain 221 308 IPR032423 -
Psa2g0038 468 Gene3D - 183 270 - -
Psa2g0038 468 CDD HLD_clamp_RarA 183 283 - -
Psa2g0038 468 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 14 465 - -
Psa2g0038 468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 266 IPR027417 -
Psa2g0038 468 Gene3D - 387 466 - -
Psa2g0038 468 CDD AAA 41 179 - -
Psa2g0038 468 Pfam ATPase family associated with various cellular activities (AAA) 65 180 IPR003959 GO:0005524|GO:0016887
Psa2g0038 468 Pfam MgsA AAA+ ATPase C terminal 309 461 IPR021886 -
Psa2g0038 468 Gene3D - 14 181 IPR027417 -
Psa2g0038 468 MobiDBLite consensus disorder prediction 1 26 - -
Psa2g0038 468 PRINTS CbxX/CfqX superfamily signature 64 79 IPR000641 GO:0005524
Psa2g0038 468 PRINTS CbxX/CfqX superfamily signature 115 134 IPR000641 GO:0005524
Psa2g0038 468 PRINTS CbxX/CfqX superfamily signature 239 251 IPR000641 GO:0005524
Psa2g0038 468 SUPERFAMILY post-AAA+ oligomerization domain-like 293 462 IPR008921 GO:0003677|GO:0006260
Psa2g0038 468 Gene3D - 283 386 - -
Psa2g0038 468 SMART AAA_5 61 183 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0038 Psa-Chr2 1388619 1391855 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0038 27 309 Core DNA Replication Machinery Family AT1G77470 24.742 4.98e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0038 K07478 - gmx:100799257 724.546