Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0027 ATGAGAGAACAAGATAATTCCGATCATCACAGAAATGCAGAATTCATCATGAAAGATCACCATCATCACCGTCCATCTTCTTCTTCACTCTCCGGAAAAAAGAGAAGAGAAACCGAATCGTCTTCATCAGGTAACAACAACAACGATAACACTCCTCGTGCTTGTACTGAATGCGGCAAGAAATTCTGGTCATGGAAAGCTCTTTTTGGTCACATGCGTTGCCATCCTGAACGTCAATGGCGAGGCATCAATCCTCCTCCGAATTTCCGACGACATCAACAGCATCAACAATATCAACAACAACAACCGCATACTCACAGTCACAGTCCTTCTCAGTTTTCAATCATGACGCAGGAAGATCACGAAGTTGCTGCTTGTTTGCTTTTACTTGCAAATTCAAATTCGAAGACGAACAACAACAGCATCAACAAAACCGCTAAGCTTAAGGCGGTTGCGGCAGTTACTACGGTGGCTACTACTGTGGATGATTCATCGTCGGTTATGGATCAAGAGATTAACAATAGTAATACTCATTTTGTGTGTTCGTGTTGTAACAAGGTTTTTGGATCGCATCAGGCTCTTGGAGGACACAGAGCGAGTCACAAGAATGTCAAGGGCTGTTTCGCCAATACAACTTCTTCACCAACAACAACAGTAACCGCTTCCACTAGTAAGATGATGACGTGGACACAACAAACTCAAGGCGGAGTTGGCGGAGGAGAAGATCATGCTTTTATCAGTGGCGGTGGTGGTGGTGGTGGCGGTGCTGGTGCTGATCATCATGATGATGAATATAACCACCACTCGACGATGAATTTGATGATTGTACCTCGTGACGGTTACAATGCTGACGTGGAAGGGGAAACGGTTAATGAAATTAGTGGAGGAGGAGGAGGACATAGGTGTGGAATATGTTTGAGGGTATTTACAACTGGACAAGCACTTGGTGGACATAAGAGGTGTCATTTTGATTCATCTAATTCTAATTCTAATTCTGTTACAGCAACAACTTCTAACAAATCATCATCTCTTAATGTTGATTTGAATTTCCCTTTTCCTCCTCTCCCTCCTCCACCACCTGATGATGATTCTTCACCTCTTACTCTTGATTTGAAGTTAGGACTTTGA 1128 0.4317 MREQDNSDHHRNAEFIMKDHHHHRPSSSSLSGKKRRETESSSSGNNNNDNTPRACTECGKKFWSWKALFGHMRCHPERQWRGINPPPNFRRHQQHQQYQQQQPHTHSHSPSQFSIMTQEDHEVAACLLLLANSNSKTNNNSINKTAKLKAVAAVTTVATTVDDSSSVMDQEINNSNTHFVCSCCNKVFGSHQALGGHRASHKNVKGCFANTTSSPTTTVTASTSKMMTWTQQTQGGVGGGEDHAFISGGGGGGGGAGADHHDDEYNHHSTMNLMIVPRDGYNADVEGETVNEISGGGGGHRCGICLRVFTTGQALGGHKRCHFDSSNSNSNSVTATTSNKSSSLNVDLNFPFPPLPPPPPDDDSSPLTLDLKLGL* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0027 375 MobiDBLite consensus disorder prediction 1 40 - -
Psa2g0027 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 300 327 IPR013087 -
Psa2g0027 375 MobiDBLite consensus disorder prediction 1 52 - -
Psa2g0027 375 SUPERFAMILY beta-beta-alpha zinc fingers 50 78 IPR036236 -
Psa2g0027 375 MobiDBLite consensus disorder prediction 351 375 - -
Psa2g0027 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 80 IPR013087 -
Psa2g0027 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 179 206 IPR013087 -
Psa2g0027 375 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Psa2g0027 375 MobiDBLite consensus disorder prediction 90 111 - -
Psa2g0027 375 Pfam C2H2-type zinc finger 178 202 - -
Psa2g0027 375 Pfam C2H2-type zinc finger 55 77 - -
Psa2g0027 375 Pfam C2H2-type zinc finger 300 322 - -
Psa2g0027 375 SMART c2h2final6 300 322 IPR013087 -
Psa2g0027 375 SMART c2h2final6 53 75 IPR013087 -
Psa2g0027 375 SMART c2h2final6 179 201 IPR013087 -
Psa2g0027 375 ProSitePatterns Zinc finger C2H2 type domain signature. 302 322 IPR013087 -
Psa2g0027 375 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 18 375 - -
Psa2g0027 375 ProSitePatterns Zinc finger C2H2 type domain signature. 181 201 IPR013087 -
Psa2g0027 375 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 18 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0027 Psa-Chr2 961334 962896 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0027 292 375 C2H2 Transcription Factor Family AT4G35280 39.286 1.73e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa2g0027 zf-C2H2_6 5.5e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0027 - - cam:101508937 256.529