Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0024 ATGGAATATGGTGGTGGGATAGTGGACGACGGCGGTGTATTTGGGACCATGGTTGGAGGAGATCAAGGAGATATAATTGAGGAGCTTTTAGGAGAAGGTTGTTGGATTGAAGCTAGTGAAAATAATATGATGGCGATGCAGCAAACTGCATCGCCACCGCAACAACACTACATAGGGAATAATATTCCCATTGGAATGGGAGAAGGAGACCATTTTAATCATCATCAAGTTGATCAAGAAAGTGGTTTTGTTGTTGGGAAGAGATGGTGGATCGGGCCGAGGGGGAGTCAAGGTCCATCGACGTCGGTGAAAGAGAGATTAGTAGTTGCTGTTGGTTACTTAAAAGAGTACACTAAGAATTCTTCCAACAACGTTCTTATTCAGATATGGGTGCCAGCTCTAAGGAGGAGATCGGCAATTCATTATCTTCAGCAGGATTCGAGTTCGTCTGTTCCGGTTTCTGTGAATCCGAACATGAATGTTCATGTTCGTTTCTTTAGAAGTCATGAGTATCCGCGGCATCAGCAACAGCAGCAGCAGTATGGATCTCTTCTAGCACTTCCTGTGTTTGAAAGAGGAAGCGGAACTTGCTTAGGTGTCATTGAGTTTGTTATCGCAAATCAAAACCTCATCAATTACCGTCCACAACTCGATCATCTCTCTAATGCTCTCGAGGCGGTTGATTTTAGAAGTAGCCACAACATGAATATTCAACCCGCGGTAAAGGTATTCGAGGAGTTATATGAAGCAGCGGTGAACGAGATAGTAGAGGTGTTGGCGTCTGTTTGCAAGACTCATAATTTGCCATTAGCACTAACATGGGCTCCTTGTATACAACAACAAGGAGGAGGAAAAGGGACTTCTGGTGGTGGTGGATGCAGTGTTTCGGTTACAGTTCCGACGGATCAGATGAACAATAATAATCATATGATGATGAGTTGCATATCCACGGTTGATTCAGCTTGTTATGTTGGTGACATGGAGGTGTTAGGATTCCAAGAAGCTTGCAGTGAGTATCATCTTTTCAATGGACAAGGAATAGTAGGAACAGCATTCACAACAACCAAGCCTTGTTTCGCGATCGACATTACAGCATTCAGCAAAGCCGAATACCCGCTCGCTCACCACGCGGACATGTTTGGATTACATGCCGCGGTCGCGATTCCATTGAGAAGTGTCTACACTGGCTCTGCAGCTGATTTTGTTTTGGAGTTTTTTCTACCTAAAGATTGTCGCGACACGGAACAACAGAAACAAATGCTGAACTCGTTATCCCTTGTTGTTCAACAAGCTTGTAGAAGCTTGCATTTGCATGTTGTTATGGAGGATGACAATGCTAATCATCACGAAGATCAAGATCAGTTCACTTTTCCAACAACAACAAATAATTACATGCCTTCTTCTGCTTCCGATGCTGCTACTACTGCATCACTGTCACAAGTTGATGCAGCTTCGGGTTGTTCAACTAAAGACACAACTTCATCATCTTGTTCATGGATTGCACATATGATGGAAGCTCAAAACAAAGGGAAAGGCGTGTCGGTGTCGTTGGAGTATCTTCAAGAGCCTAAAGAGGAATTCAAAGTCACAACCTGTAACTGGGAGAGAGAGGGAAATTCAGTCTTTTCAGAATTTGGCCAAGTAATACAGCATGATCAGAGCAGTAACTCAAGAGCAAGTGTAGAGGCCGGTGAAGAATCCGGAGGCGGAGGAACCGGCGGTGGACGCAGGTCATCATCTTCTTCAAGCGGACGAAAGTCAGGCGACAAGCGACGGACCAAGGCGGAGAAGACCATAAGCTTGCCTGTTCTAAGACAATACTTCGCCGGAAGCCTAAAGGACGCCGCAAAGAGCATCGGTGTATGTCCTACAACTCTGAAAAGGATATGCAGACAGCATGGGATAACAAGGTGGCCTTCAAGAAAAATAAAGAAAGTGGGACATTCTTTGAAGAAGCTTCAACTGGTGATAGATTCTGTTCAAGGTGCTGAGGGTGCTATACAGATTGGATCTTTCTATGCAAGCTTTCCAGAGTTGAGCACTGCAGCTGCTCATGGCGGTGGCGGCGGTGGTGATCACATCAACAACAACAGTTTCTATAACAGCCATGGAGATTTAGTTACTAATTTGAAATCTCCACCTTCTGCATGCAGTCAGACTCATGCAGCAGGAAACAAATCTATTATTAATGGAGATCATCATCATCATCATCATCAGCATCTTGTGATGACAGAAAACCTTGCAGCTCCTTCAGCAGTTGATGCATTAATGCAACATGCATCCACTATTAATATCCAAGACTATCAACAACTACAAGAGGATCATGATACTAAACAGTTACTTCTACATTTCAACAACAACAACAACAACAGCAATAACCAAACCCTACCTCCAAGACCAACTGTAACATGGAACAACAACAATTCATCATCATCAGGACTATTGGAAAGAGGTGCTTTCAGAGTGAAGGCGACGTTCGCGGACGAAAAGATACGGTTTAGCTTGCAAGCAGTGTGGTGTTTTAGAGATCTGCAGCTTGAGATAGCAAGGCGTTTTAACCTAAATGATATGAACAATTTGGTTCTCAAGTATTTGGATGATGAAGGAGAATGGGTTGTGTTAGCATGTGATAGTGATCTTGAAGAGTGTAAAGACTTGCATACATCATCTCACACAAGAACCATAAGACTCTCACTTTTTCAAGCTTCTCCTTTGAATAATCTTGCAAACAGCTTCCGCAACAACAGTAGCAGTCCATCTTCCTAG 2766 0.436 MEYGGGIVDDGGVFGTMVGGDQGDIIEELLGEGCWIEASENNMMAMQQTASPPQQHYIGNNIPIGMGEGDHFNHHQVDQESGFVVGKRWWIGPRGSQGPSTSVKERLVVAVGYLKEYTKNSSNNVLIQIWVPALRRRSAIHYLQQDSSSSVPVSVNPNMNVHVRFFRSHEYPRHQQQQQQYGSLLALPVFERGSGTCLGVIEFVIANQNLINYRPQLDHLSNALEAVDFRSSHNMNIQPAVKVFEELYEAAVNEIVEVLASVCKTHNLPLALTWAPCIQQQGGGKGTSGGGGCSVSVTVPTDQMNNNNHMMMSCISTVDSACYVGDMEVLGFQEACSEYHLFNGQGIVGTAFTTTKPCFAIDITAFSKAEYPLAHHADMFGLHAAVAIPLRSVYTGSAADFVLEFFLPKDCRDTEQQKQMLNSLSLVVQQACRSLHLHVVMEDDNANHHEDQDQFTFPTTTNNYMPSSASDAATTASLSQVDAASGCSTKDTTSSSCSWIAHMMEAQNKGKGVSVSLEYLQEPKEEFKVTTCNWEREGNSVFSEFGQVIQHDQSSNSRASVEAGEESGGGGTGGGRRSSSSSSGRKSGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYASFPELSTAAAHGGGGGGDHINNNSFYNSHGDLVTNLKSPPSACSQTHAAGNKSIINGDHHHHHHQHLVMTENLAAPSAVDALMQHASTINIQDYQQLQEDHDTKQLLLHFNNNNNNSNNQTLPPRPTVTWNNNNSSSSGLLERGAFRVKATFADEKIRFSLQAVWCFRDLQLEIARRFNLNDMNNLVLKYLDDEGEWVVLACDSDLEECKDLHTSSHTRTIRLSLFQASPLNNLANSFRNNSSSPSS* 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0024 921 PANTHER PROTEIN NLP8 27 914 IPR045012 GO:0003700
Psa2g0024 921 CDD PB1_NLP 820 901 IPR034891 -
Psa2g0024 921 SUPERFAMILY CAD & PB1 domains 808 904 - -
Psa2g0024 921 ProSiteProfiles RWP-RK domain profile. 585 666 IPR003035 -
Psa2g0024 921 Pfam RWP-RK domain 599 646 IPR003035 -
Psa2g0024 921 SMART PB1_new 819 902 IPR000270 GO:0005515
Psa2g0024 921 ProSiteProfiles PB1 domain profile. 819 902 IPR000270 GO:0005515
Psa2g0024 921 PANTHER PROTEIN NLP2 27 914 - -
Psa2g0024 921 Gene3D - 818 904 - -
Psa2g0024 921 Pfam PB1 domain 820 901 IPR000270 GO:0005515
Psa2g0024 921 MobiDBLite consensus disorder prediction 552 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0024 Psa-Chr2 736090 740139 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0024 24 920 NLP Transcription Factor Family AT4G35270 40.361 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Psa2g0024 PB1 3e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0024 - - mtr:MTR_5g099060 1337.4