Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0015 ATGGGCAATACATGCCGTGGATCTTTGAAAGGAAAATATATCGAGGGCTTCCCACAGCCCGAATCAGACAATTCCAATTCCAAACGTGATTCACCCAGAGTCAATCGTCCACCACCACCCTTCAACTTCACCTCCACCGCCATGCGTCGAACCGCCGATAACCAGACTTATTATGTCTTGGGCCATAAGACTCCCAACATACGTGATATATATACTCTTGGCCGAAAGCTCGGTCAAGGTCAATTCGGTACTACTTTTCTGGCTCTTGACAATTCCACCTCTATTGAGTATGCTTGCAAATCTATTTCCAAGAGGAAACTTATTTCCAAAGAGGATGTCGAGGATGTCAGGAGGGAGATTCAGATTATGCATCATTTGGCCGGTCATAAGAATATTGTTACCATCAAGGGTGCTTACGAGGATTCCCTTTATGTCCATATTGTTATGGAGCTTTGTTCCGGAGGTGAGCTCTTTGATCGGATTATCCAGAGAGGTCATTATACCGAGAGGAAGGCCGCTGAGTTGACCAAAATTATCGTTGGCGTTGTCGAAGCTTGTCATTCTCTTGGGGTTATGCATAGAGATCTCAAACCTGAAAACTTTCTCTTGGTCAATAAAGACGATGATTTCTCTCTTAAAGCTATTGACTTTGGCCTCTCCGTTTTCTTCAAACCAGGTCAAGTTTTCACGGATGTAGTTGGCAGCCCATACTATGTGGCTCCTGAGGTTCTCCTCAAGCATTATGGGCCCGAAGCAGATGTGTGGACCGCCGGTGTCATACTTTATATATTGCTCAGTGGTGTGCCACCGTTTTGGGCAGAGACCCAGCAAGGTATATTTGACGCAGTATTGAAGGGACAGATAGATTTTGAATCGGATCCGTGGCCTTTAATATCGAATAGTGGGAAAGATCTTATTAGAAAGATGCTGTGTTCTCGGCCTGCAGATCGCTTGACTGCCCATGAAGTTTTATGTCATCCTTGGATATGTGAAAATGGCGTTGCCCCTGACAGAGCATTGGATCCTGCTGTTCTTTCTCGTCTCAAACAGTTTTCTGCAATGAATAAGCTAAAGAAGATGGCTTTGCGGGTGATTGCTGAAAGTCTATCGGAGGAGGAAATTGCTGGTTTGAGAGAAATGTTTCAGGCTATGGATACTGATAGCAGTGGTGCAATCACTTTTGATGAACTCAAAGCTGGTCTAAGAAGATATGGGTCTACCCTTAAGGATACAGAAATACGTGATCTTATGGAAGCGGCTGACGTGGACAACAGTGGAACTATAGATTACGGGGAGTTTATTGCTGCAACAGTTCATCTCAACAAACTGGAGCGTGAGGAGCATCTTGTTGCAGCATTCCGATATTTTGACAAGGATGGAAGTGGTTATATTACAGTTGATGAACTTCAACAAGCTTGTGCAGAACATAACATGACTGATGTTTTTCTTGAAGATATTATCAAGGAAGTTGATCAAGATAACGATGGAAGGATTGATTATGGTGAATTTTCTGCCATGATGCAAAAAGGCAATGTTGGGGTTGGTAGGAGGACTATGCGCAACAGTTTGAATTTGAGCATGAGGGATGCACCTAGTAGCTTTTAG 1605 0.4374 MGNTCRGSLKGKYIEGFPQPESDNSNSKRDSPRVNRPPPPFNFTSTAMRRTADNQTYYVLGHKTPNIRDIYTLGRKLGQGQFGTTFLALDNSTSIEYACKSISKRKLISKEDVEDVRREIQIMHHLAGHKNIVTIKGAYEDSLYVHIVMELCSGGELFDRIIQRGHYTERKAAELTKIIVGVVEACHSLGVMHRDLKPENFLLVNKDDDFSLKAIDFGLSVFFKPGQVFTDVVGSPYYVAPEVLLKHYGPEADVWTAGVILYILLSGVPPFWAETQQGIFDAVLKGQIDFESDPWPLISNSGKDLIRKMLCSRPADRLTAHEVLCHPWICENGVAPDRALDPAVLSRLKQFSAMNKLKKMALRVIAESLSEEEIAGLREMFQAMDTDSSGAITFDELKAGLRRYGSTLKDTEIRDLMEAADVDNSGTIDYGEFIAATVHLNKLEREEHLVAAFRYFDKDGSGYITVDELQQACAEHNMTDVFLEDIIKEVDQDNDGRIDYGEFSAMMQKGNVGVGRRTMRNSLNLSMRDAPSSF* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0015 534 ProSitePatterns EF-hand calcium-binding domain. 385 397 IPR018247 -
Psa2g0015 534 CDD STKc_CAMK 71 328 - -
Psa2g0015 534 SUPERFAMILY Protein kinase-like (PK-like) 54 353 IPR011009 -
Psa2g0015 534 Gene3D - 339 511 - -
Psa2g0015 534 SMART efh_1 376 404 IPR002048 GO:0005509
Psa2g0015 534 SMART efh_1 448 476 IPR002048 GO:0005509
Psa2g0015 534 SMART efh_1 482 510 IPR002048 GO:0005509
Psa2g0015 534 SMART efh_1 412 440 IPR002048 GO:0005509
Psa2g0015 534 Gene3D Transferase(Phosphotransferase) domain 1 157 338 - -
Psa2g0015 534 ProSiteProfiles EF-hand calcium-binding domain profile. 372 407 IPR002048 GO:0005509
Psa2g0015 534 PANTHER SERINE/THREONINE-PROTEIN KINASE 39 519 - -
Psa2g0015 534 ProSitePatterns EF-hand calcium-binding domain. 491 503 IPR018247 -
Psa2g0015 534 MobiDBLite consensus disorder prediction 11 40 - -
Psa2g0015 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Psa2g0015 534 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Psa2g0015 534 ProSitePatterns EF-hand calcium-binding domain. 421 433 IPR018247 -
Psa2g0015 534 SMART serkin_6 71 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g0015 534 ProSiteProfiles Protein kinase domain profile. 71 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g0015 534 ProSitePatterns EF-hand calcium-binding domain. 457 469 IPR018247 -
Psa2g0015 534 Pfam Protein kinase domain 71 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g0015 534 Pfam EF-hand domain pair 447 508 IPR002048 GO:0005509
Psa2g0015 534 Pfam EF-hand domain pair 377 437 IPR002048 GO:0005509
Psa2g0015 534 CDD EFh 448 508 IPR002048 GO:0005509
Psa2g0015 534 ProSiteProfiles EF-hand calcium-binding domain profile. 483 513 IPR002048 GO:0005509
Psa2g0015 534 SUPERFAMILY EF-hand 353 510 IPR011992 -
Psa2g0015 534 ProSiteProfiles EF-hand calcium-binding domain profile. 408 443 IPR002048 GO:0005509
Psa2g0015 534 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 4 39 519 - -
Psa2g0015 534 Gene3D Phosphorylase Kinase; domain 1 73 156 - -
Psa2g0015 534 ProSiteProfiles EF-hand calcium-binding domain profile. 444 479 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0015 Psa-Chr2 426334 431055 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0015 1 530 EF-hand Containing Proteins AT2G17290 83.088 0.0 936
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Psa2g0015 Pkinase 5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0015 K13412 - gmx:100778173 964.526