Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0011 ATGGAGAACGAGATGGTAGAATTTGATATTGCTTTGGGAGGAGGAGAATACCAAGAGGAGGAAGATGAAGAAGATGAAGATGAAGATGATTTGGATTTGGTAGAAACCACCGGTGCTATCTATTTTCCCGAACCCGGAGATCTCGAACCTTGCGATGGGATGGAATTTGAGTCTGAAGAGGCTGCCAAGGCTTTCTATAATTCCTATGCCCGTCGTGTTGGATTTAGCACTCGTGTCAGCTCCTCCCGTCGTTCACGTCGCGACGGAGCTATCATTCAGAGACAATTCGTTTGTGCCAAAGAAGGCTTTCGCAATTTGAACGAGAAACGCACCAAAGATAGAGAGATCAAAAGGCCGCGAACGGTTACCAGAGTTGGATGCAAGGCTTCTTTTTCTGTCAAAATGCAAGATTCCGGCAAGTGGATTGTTTCTGGGTTTGTCAGAGATCATAATCACGAACTTGTTCCGCCGGATCAGGTTCACTGCCTTCGTTCCCACAGGCAAATATCTGGATCTGCAAAGACCCTCATTGACACTCTTCAGGCAGCTGGTATGGGTCCTCGGAGGATTATGTCGGCTCTCATCAAAGAGTATGGCGGTATTAGCAGAGTCGGCTTTACCGAGGTTGATTGTAGGAATTACATGAGGAATAATCGACACAGAAGTTTACAAGGGGATATTCAGCTTGTTCTTGATTATTTGAGACAGATGCATGCCCAAAACCCTAATTTCTTCTTTGCTGTTCAAGGTGATGCTTCCTTTGACTGGCTTTTCAAGACGTGGCTTATGGCCATGTCCGGACGTCCCCCACTCTCAATAACTACCGACCATGATTCTGTTATTCAGTCCGCCATAATGCAAGTATTTCCCAACACCCGCCACCGTTTCTGCAAGTGGCACATCTTTAAGCAGTGCCAAGAGAAGTTGTCTCACATTTTCCTCCAGTTTCCAAATTTTGAAGCTGAGTTTCACAAATCTGTTAACTTAACTGACTCAATTGACGAATTCGAGTCTTGCTGGTCCACACTTGTAGATAGATACGGTCTCAGGGACAATGAATGGCTTCGGGCAATACATTCCGCTTGCAGGCAGTGGGTGCCTGTATATTTGCGAGACACGTTCTTTGCAGAAATGTCCATCACTCAGCGGAGTGATAGCATGAACTCTTACTTTGATGGCTATGTCAATGCTTCCACCAGTTTAAATCAGTTCTTTAAGCTTTATGAGAAAGCGCTTGAAAGTCGCAACGAGAAAGAAGTAAGAGCAGATTATGACACAATGAATACTTTACCAGTATTGAGGACCCCATCTCCAATGGAGAGGCAAGCATCTGAGCTTTACACAAGAAAGATTTTCATGAGGTTCCAAGAGGAGTTGGTTGGCACACTAACATTCATGGCATCCAAAGCCGAGGACGATGGAGAGGTCATTACATATCATGTAGCTAAATTTGGAGAAGATCATAAAGCATACATTGTTAGATTCAATGTTTTGGCGATGAAAGCGACTTGCAGTTGCCAAATGTTTGAGTTTTCAGGTCTTCTTTGCAGACATATTCTGGCAGTCTTTAGAGTTACCAATGTCCTTACTCTTCCATCTCATTACATACTGAAACGTTGGACAAGAAATGCCAAGAGCAATGTCATTTTGCAAGAACATTCTTGTGATGTATATACTTACTACTTGGAATCTCATACAGTTAGATATACCACTCTCCGACACGAGGCCTTTAAATTTGTTGATAAAGGTGCAAGCTCCCCTGAAACTTTTGATGTTGCAAAGGATGCTTTACAAGAAGCTGCAAAAAAAGTTGCACAGGTAAACCGAAATGAGGGGAGAACTCCCATCAGCAATGGGAAGGTTAGGAGTCACTTGCTGAATGATGAAAGTCGTGCTAATTACACTAGTAGCTGCCAGGATGAAAGCTTGGTCGAGCATATGAATAAGGATGATATGGATAAGCATATTGCAAAACTTACCGATGAGCTCGAGTCTGCAAATAGGAAGTGTGAAATATACCGGTCCAACTTGCTCTCTGTTTTAAAAGCTGTTGAGGATCACAAGTTAGAGTTGTCAGTAAAGGTGGAAAACATTAAGATAGGCATGAAAGAGGGCCTCTGA 2121 0.4338 MENEMVEFDIALGGGEYQEEEDEEDEDEDDLDLVETTGAIYFPEPGDLEPCDGMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRTKDREIKRPRTVTRVGCKASFSVKMQDSGKWIVSGFVRDHNHELVPPDQVHCLRSHRQISGSAKTLIDTLQAAGMGPRRIMSALIKEYGGISRVGFTEVDCRNYMRNNRHRSLQGDIQLVLDYLRQMHAQNPNFFFAVQGDASFDWLFKTWLMAMSGRPPLSITTDHDSVIQSAIMQVFPNTRHRFCKWHIFKQCQEKLSHIFLQFPNFEAEFHKSVNLTDSIDEFESCWSTLVDRYGLRDNEWLRAIHSACRQWVPVYLRDTFFAEMSITQRSDSMNSYFDGYVNASTSLNQFFKLYEKALESRNEKEVRADYDTMNTLPVLRTPSPMERQASELYTRKIFMRFQEELVGTLTFMASKAEDDGEVITYHVAKFGEDHKAYIVRFNVLAMKATCSCQMFEFSGLLCRHILAVFRVTNVLTLPSHYILKRWTRNAKSNVILQEHSCDVYTYYLESHTVRYTTLRHEAFKFVDKGASSPETFDVAKDALQEAAKKVAQVNRNEGRTPISNGKVRSHLLNDESRANYTSSCQDESLVEHMNKDDMDKHIAKLTDELESANRKCEIYRSNLLSVLKAVEDHKLELSVKVENIKIGMKEGL* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0011 706 Coils Coil 17 37 - -
Psa2g0011 706 MobiDBLite consensus disorder prediction 1 30 - -
Psa2g0011 706 Coils Coil 590 610 - -
Psa2g0011 706 MobiDBLite consensus disorder prediction 14 30 - -
Psa2g0011 706 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 251 676 IPR031052 GO:0006355
Psa2g0011 706 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 32 252 IPR031052 GO:0006355
Psa2g0011 706 SMART 26again6 502 529 IPR006564 GO:0008270
Psa2g0011 706 Pfam MULE transposase domain 251 303 IPR018289 -
Psa2g0011 706 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 251 676 - -
Psa2g0011 706 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 32 252 - -
Psa2g0011 706 Coils Coil 649 676 - -
Psa2g0011 706 Pfam SWIM zinc finger 479 525 IPR007527 GO:0008270
Psa2g0011 706 Pfam FAR1 DNA-binding domain 65 156 IPR004330 -
Psa2g0011 706 ProSiteProfiles Zinc finger SWIM-type profile. 491 527 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0011 Psa-Chr2 356777 360695 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Psa2g0011 FAR1 3.4e-33 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0011 - - cpap:110813872 1055.43