Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g5133 ATGTCTCTCACGGGCCGGCCTCGTGTTATCGTCAACGGTGTTCGAAGAATGAGAACCTTTCATTATTTCTGGTGTCTCAACTGCCAACGTACTGTCAGAACTCCATCAACAAATACTATTACAGATTATGGCTCTTTCTGTCCATATTGCTTCCATCAATTGCGGTATGAACTTGATATATCAAGGCCAAGACTTCTCATGAATAATCCTAATAACATGGACCCTCCTCCTTCTACTAATCAGTTAATGGGTAGCTTAGCTTTCATTCTTGATCCATCTTTTAGAAGACAAAACCAAAACAACACAACACTACAATGGGAAACAGAACATGAACATGATCAAAATGAAAATCGAAATCCACAAACATGGATTACACTCCGATTTGTAAGACCGACTCGTCCACCGAGGCCTATTGCTCCCCCGCCACCACCACCACCACAAAACTTGGTTCCTCGACTCAATGACAATAACACCCATTCGTTAGATGAGTTATTTGATGGGATGATTCACAACAACCTCAGACCGGGACCGCCTCCCACGTCACCTTCCGCCATTGAAGCCTTACCAATGGTGAAAGTAACAGAAACTCATTTGGCAAGTGATCCGAATTGTCCAATATGTAAAGATGAGTTTGAAGTTGATTTGGAAGTGAAAGAGTTACCATGCAAACATTTCTACCATTCTGACTGCATTCTCCCGTGGCTTCGTATGCACAACACTTGCCCTGTATGCCGCCACGAGCTACAAGGGATTGATAATAGTAACAATGCTAATTACTACTCTTTTCACAATGAGAATGAGTACGACGGATTCATTGGGTTTGAGGAACTTACAAGCAGTTTTATTTGGATTTGGAGCCAAATTGCTTCGATTAGGCCTATTCGTGCAGTCTTAGATTGGACGCGGTCCCATTTCAGTAACCATGCCCATGCCCGTGCTCGTAGGAATGGTAGCGCTTGGTGGCGAGCATTGCTCATTTCGTAG 984 0.435 MSLTGRPRVIVNGVRRMRTFHYFWCLNCQRTVRTPSTNTITDYGSFCPYCFHQLRYELDISRPRLLMNNPNNMDPPPSTNQLMGSLAFILDPSFRRQNQNNTTLQWETEHEHDQNENRNPQTWITLRFVRPTRPPRPIAPPPPPPPQNLVPRLNDNNTHSLDELFDGMIHNNLRPGPPPTSPSAIEALPMVKVTETHLASDPNCPICKDEFEVDLEVKELPCKHFYHSDCILPWLRMHNTCPVCRHELQGIDNSNNANYYSFHNENEYDGFIGFEELTSSFIWIWSQIASIRPIRAVLDWTRSHFSNHAHARARRNGSAWWRALLIS* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g5133 327 SMART ring_2 204 244 IPR001841 -
Psa1g5133 327 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 21 321 - -
Psa1g5133 327 SUPERFAMILY RING/U-box 184 259 - -
Psa1g5133 327 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 21 321 - -
Psa1g5133 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 250 IPR013083 -
Psa1g5133 327 CDD RING-H2_RNF126_like 204 245 - -
Psa1g5133 327 Pfam Ring finger domain 203 245 IPR001841 -
Psa1g5133 327 ProSiteProfiles Zinc finger RING-type profile. 204 245 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g5133 Psa-Chr1 371979629 371982315 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g5133 1 301 C3H Transcription Factor Family AT1G68180 32.248 1.01e-39 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g5133 K11982 - gmx:100793656 382.489