Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g5118 ATGGGTGGAAGAATAAATGGGTTTGATTGGGTGAAGGGTAAAATTGTTGGAAGTGGGTCTTTTGGCAGTGTTCATCTAGCCATGAACAGATCAACCGGTGGACTTTTCGTAGCCAAAACAGCGCATTCAGATGCTGGACATGAGGCTCTCCAGAACGAGGTGAATATTCTTAATACATTAAAGAATTCATCATCATCGTCGTCGTCGCAGTCACCGTCGCCCTATATTATACAATGTTTAGGGACAGAGTATGATCATCAAGATAATAATAATAAGCTGCATGTTTTCATGGAGTATATGGCTGGAGGTAGTTTGGCTGACGCGTTACACAAGTTTGGTGGTTCGTTCGATGAACATGTTGTTCGTTTGTATACTAGACAGATTTTGCTTGGGTTATATCATCTTCACCAACAAGGAATTGTGCATTGTGACCTCAAATGCAAAAATGTGCTTCTGTCCTCGTCTGGGACAGTTAAGCTCGCAGATTTCGGATGTGCAAAAAGGATCGGCAAGGACTCGCACACGAACAAATCACCTTCGTCTGGGGGCACACCTCTATGGATGGCTCCTGAAGTATTATTATTGAGGAATGGTAAAGAGGAGAGGGTTGTTGATTTTGCAGCAGCAGATATATGGTCTTTGGGATGTACTGTTATTGAAATGGCGACGGGTAGGCCTCCCTGGGTTCATGATGATCTCGTATCTATTTCAAATCCAATGTCTGCTATGTTTAAGATTGCCTGTGGTGATGGGATACCTCAATTTCCAAGTCATTTCTCTCAGGAGGGTTTCGATTTCTTGAGAAGATGTTTGGTGAGAGATCCTAATAAGAGGTCTACCGCAAAGGACTTGCTTAATCATCCATTCCTTGTTGCAAATACTTTAACTTATCACAAACCCTACTGTAATGCCTCACCAGCAGCTGTCTTGGATGTTCATCAATTTGAGGATGATTATGACGACGACGACGGCGAAGAAAAATTGCCAAGTCCAGCAGGGAGGAATAAATTCTCATTCGGAAATGAGTTTGTGTCCCCACAAGTAAAAACAATATGGCAACAGGAAGATAGTGCATCAGGGAATCATTGGATTACCATTAGATCATGGTGA 1110 0.4252 MGGRINGFDWVKGKIVGSGSFGSVHLAMNRSTGGLFVAKTAHSDAGHEALQNEVNILNTLKNSSSSSSSQSPSPYIIQCLGTEYDHQDNNNKLHVFMEYMAGGSLADALHKFGGSFDEHVVRLYTRQILLGLYHLHQQGIVHCDLKCKNVLLSSSGTVKLADFGCAKRIGKDSHTNKSPSSGGTPLWMAPEVLLLRNGKEERVVDFAAADIWSLGCTVIEMATGRPPWVHDDLVSISNPMSAMFKIACGDGIPQFPSHFSQEGFDFLRRCLVRDPNKRSTAKDLLNHPFLVANTLTYHKPYCNASPAAVLDVHQFEDDYDDDDGEEKLPSPAGRNKFSFGNEFVSPQVKTIWQQEDSASGNHWITIRSW* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g5118 369 SMART serkin_6 10 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g5118 369 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Psa1g5118 369 Pfam Protein kinase domain 11 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g5118 369 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 8 368 - -
Psa1g5118 369 CDD STKc_MAPKKK 9 290 - -
Psa1g5118 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Psa1g5118 369 Gene3D Transferase(Phosphotransferase) domain 1 9 327 - -
Psa1g5118 369 SUPERFAMILY Protein kinase-like (PK-like) 9 305 IPR011009 -
Psa1g5118 369 ProSiteProfiles Protein kinase domain profile. 10 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g5118 369 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE 8 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g5118 Psa-Chr1 371414046 371415155 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g5118 8 367 MAP Kinase Kinase Kinase AT4G26890 36.870 2.42e-64 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Psa1g5118 Pkinase 2.1e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g5118 K20716 - mtr:MTR_2g005290 554.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g5118 1 371414046 371415155 Psa1g5118 1 371414046 371415155 ECH