Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g5115 ATGGCTTCCAATCAAATGTCAGCTACAACCCGTGCAGGGGCAACCAATGATGCCTTATACAAGGAATTGTGGCATGCATGTGCTGGACCCCTTGTCACTCTTCCTCGTGAAGGGGACAGAGTTTATTACTTCCCTCAAGGTCACATGGAACAGCTCGAGGCGTCTATGAATCAGGGATTAGAGCAGCAAATGCCCTCCTTTAATCTTCCTTCTAAAATATTATGTAAAGTGGTCAATATTCATCTTCGGGCTGAACCTGAAACAGATGAAGTATATGCACAAGTAACTTTGCTACCTGAATCCGATCAAAGTGAGGTGACAAGCCCAGATGATCCTCTGCCTGAACCTTCAAGGTGCACAGTTCATTCATTTTGCAAGACACTTACTGCTTCTGACACTAGCACTCATGGAGGTTTCTCTGTTCTTCGAAGACATGCAGATGATTGTCTACCACCACTAGACATGACTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTGCATGGGAATGAATGGCATTTTCGACACATTTTTCGTGGGCAACCCAGGCGCCACTTACTGACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAGAAATTAGTGGCTGGAGACGCATTTATATTCTTAAGGGGTGAAAATGGAGAACTCCGAGTTGGAGTCAGGAGGCTCATGAGACAGCAAAGCAATATGCCATCTTCTGTTATATCTAGTCACAGCATGCATCTTGGTGTTCTGGCCACTGCATCTCACGCCATTTCCACTGGAACACTTTTTTCTGTGTTTTACAAGCCCAGAACAAGCCGGTCAGAGTTTATTGTGAGTATTAACAAATATCTGGAAGCTCGAAATCATAAACTTTCTGTTGGGATGCGATTCAAAATGAGGTTTGAGGGTGATGAGGTACCTGAGCGAAGGTTTAGCGGTACAATTGTGGGTGTTGAAGATAATAAATCGTCCGTCTGGGCTGATTCTGAGTGGCGATCATTAAAGGTTCAATGGGATGAACCATCATCAATATTGCGTCCGGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTGTCTACCCCTCCTGCAAACTCCCAGCCAGCCCAACGAAACAAGAGATCACGGCCTCCTGTTCTACCTTCCACAATGCCTGAATCTTCTTTGCAAGGTATATGGAAATCACCAGTTGATTCTCCACCTTTCCCTTATCGTGACTCTCAACATGCACGAGACCTCTATCCATCTCCAAGATTCAGCTCTACTGCGACTAGCTTTCTTGGTTTTGGTGGGAACAGTCCTGCTTCTAACAAGTCAATATATTGGTCTAGTAGACTGGAAAACTCTACAGAACCTTTTTCACCCATGGCACTTAAAGAATCCGGAGAGAAGAGACAAGGCACTGGAAGTGGCTGTAGGCTCTTTGGGATTCAGTTACTTGAGAATTCTAATGCAGAAGAAAGTCTGCAAGCAGCTCCTTTCTCAAGAAGGGTTGCTGATGATGAGTCTGACCAACATTCTGAACCGTCAAATGTTAATCGGTCTGATATTCCTTCAGTAAGTTGTGATGCTGACAAATCATGCCTGCGGTCTCCTCAGGAGTCGCAAAGCAGACAAATAAGAAGCTGCACAAAGGTTCACATGCAAGGTATGGCTGTTGGAAGGGCTGTGGATTTAACTCGTTTTGATGGATATGAGGATCTGCTTAGGAAATTGGAAGAAATGTTTGAAATTGAGGGTGAGCTTTGCGGACCAACAAAAAAATGGCTAGTTGTTTACACTGACAATGAAGATGATAGGATGATGGTTGGGGATGATCCATGGCTTGAATTTTGTAGCGTTGTGAGGAAAATTTTCATCTACACGCCAGAAGAGGTGAAGAAGCTTTCACCCAAAATAGGTATTGTGACCAATGAAGAAGGTAAACCAAGCAAACTGGATTCGGAAGCAGTTGTCAATCCGGAGGACCAGTCATCTATTGTGGGGCCTGGTTGCTAA 1989 0.447 MASNQMSATTRAGATNDALYKELWHACAGPLVTLPREGDRVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNIHLRAEPETDEVYAQVTLLPESDQSEVTSPDDPLPEPSRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQSNMPSSVISSHSMHLGVLATASHAISTGTLFSVFYKPRTSRSEFIVSINKYLEARNHKLSVGMRFKMRFEGDEVPERRFSGTIVGVEDNKSSVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSTPPANSQPAQRNKRSRPPVLPSTMPESSLQGIWKSPVDSPPFPYRDSQHARDLYPSPRFSSTATSFLGFGGNSPASNKSIYWSSRLENSTEPFSPMALKESGEKRQGTGSGCRLFGIQLLENSNAEESLQAAPFSRRVADDESDQHSEPSNVNRSDIPSVSCDADKSCLRSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFEIEGELCGPTKKWLVVYTDNEDDRMMVGDDPWLEFCSVVRKIFIYTPEEVKKLSPKIGIVTNEEGKPSKLDSEAVVNPEDQSSIVGPGC* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g5115 662 MobiDBLite consensus disorder prediction 357 390 - -
Psa1g5115 662 ProSiteProfiles B3 DNA-binding domain profile. 124 226 IPR003340 GO:0003677
Psa1g5115 662 Gene3D - 121 226 IPR015300 -
Psa1g5115 662 Gene3D - 533 627 - -
Psa1g5115 662 Pfam Auxin response factor 250 332 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Psa1g5115 662 Pfam B3 DNA binding domain 124 224 IPR003340 GO:0003677
Psa1g5115 662 ProSiteProfiles PB1 domain profile. 538 631 IPR000270 GO:0005515
Psa1g5115 662 CDD B3_DNA 122 224 IPR003340 GO:0003677
Psa1g5115 662 Gene3D - 287 359 - -
Psa1g5115 662 PANTHER AUXIN RESPONSE FACTOR 1 16 624 - -
Psa1g5115 662 MobiDBLite consensus disorder prediction 488 514 - -
Psa1g5115 662 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 624 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa1g5115 662 SMART B3_2 124 226 IPR003340 GO:0003677
Psa1g5115 662 MobiDBLite consensus disorder prediction 637 662 - -
Psa1g5115 662 Pfam AUX/IAA family 585 628 IPR033389 -
Psa1g5115 662 Pfam AUX/IAA family 535 574 IPR033389 -
Psa1g5115 662 SUPERFAMILY CAD & PB1 domains 540 615 - -
Psa1g5115 662 SUPERFAMILY DNA-binding pseudobarrel domain 113 253 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g5115 Psa-Chr1 371315686 371325230 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g5115 1 656 B3 DNA Binding Superfamily AT1G59750 70.509 0.0 934
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Psa1g5115 AUX_IAA 3.3e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g5115 K14486 - gmx:100793224 1202.96