Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g5102 ATGGATCAGTCGGAGGCAGATGAAAGAATTGAGATTGGCGACGGTGATGATGGTGATCATCACCACAAACAACCGTTGCTCGTTAGACGGAGAACCAATGCATCTTCTCAACTCGCCATCGTCGGAGCCAATAAATCTCCAATTCAAAGTCTTGATTACGAGATGATTGAGAATGATCTGTTAAAGCAGGACTGGAGGTCAAGAACAAAGGTTGAGATATACCAATATGTTGTTCTCAAGTGGACCCTTGCACTTCTTATTGGTTTAATTACAGGACTTGTTGGCTTCTTTAACAACCTTGGAGTTGAGAACATTGCTGGTTTCAAACTTTTACTTACCAACAATCTCATGATCAACCAAAAGTATCATCAGGCATTTGCAGCCTACTTTGGCTGTAACATGATTTTAGGGGTCGGCGCCGCAGCTCTCTGTGCTTACATTGCCCCTGCAGCAGCAGGTTCCGGCATACCCGAGGTCAAGGCATACCTCAACGGCATCGATGCGCATTCTATCTTGGCTCCATCTACACTCTTTGTCAAGATATTTGGTTCAATTTTAGGAGTTGCTGGTGGTTTTGTTGTGGGGAAAGAAGGACCTATGGTACATACAGGTGCTTGCATTGCTAATTTACTCGGACAGGGCGGTTCTCGTAAATATAGACTCACTTGGAGATGGCTCAGATACTTCAAAAATGATAGAGATCGAAGGGATTTGATCACATGCGGTGCAGCTGCAGGTGTTGCAGCTGCTTTCCGTGCTCCAGTTGGCGGAGTCCTTTTCGCACTCGAAGAAGCAGCTTCGTGGTGGAGGAGTGCTCTTCTGTGGCGCACGTTTTTCACCACCGCCGTTGTAGCAGTTGTTCTTAGGGGTCTTATGCAATTTTGCCATCAAGGAGAAGGCAAATGTGGTCTGTTTGGGGAAGGAGGACTCATCATGTTTGATGTCAATTCTCTAGAGCCTGCCTACACCACACCCGACCTCCTCGCAGTTATATTTCTTGGAGTCATTGGTGGTCTTATGGGAAGCCTTTACAATTATCTTGTCGACAAAGTCCTTCGCACTTACACCACCATAAATGGGAAAGGTCCTATATTCAAAATTCTACTGGTGATGGTTATCTCGTTTATGACCTCTTGTATTCGATTTGGGCTACCGTTGCTATCAAAGTGTGTGCCATGTTCAGGAGAATGCCCGAACTCACCATCCACCGGCTTTTCAATGCACTACGACAGTTTTCAGTGTCCACCAAACCACTTCAATGATCTAAGCTCACTCCTTTTCACTACCAACGACGATGCCATCCGCAAACTATTCATTGATAGCTCTGAATCTGCCAACGCTGCATTTCAACTATCAAGTCTCATAATTTTCTTCGTGGCGATATACTTGCTTGGAATTGTCACATACGGTGTTGCCATTCCCTCTGGTCTCTTCATTCCTGTCATACTTGCAGGAGCTTCATACGGACGTCTAGTAGGGACCGTGTTAAATCCATTCACGGATCTCGATGCGGGCTATTTTGCTCTCCTTGGAGCTGCATCTTTCCTTGGCGGCACCATGAGAATGACAGTTTCTCTCTGTGTCATACTTCTCGAACTCACTAACAACTTGTTGATGCTCCCATTAGTTATGCTGGTTCTCCTCGTTTCTAAAACAGTGGCGGATTGTTTCAACAAAGGTGTTTATGATCAGATTGTGATGTTGAAAGGACTTCCTTTCATGGAGGCACATGCAGAGCCATACATGAAGAATTTAGTCGCAGGCGATGTTGTATCCGGTCCACTCTTTACTTTCAGCGGAATCGAGAAAGTTGGTACCATTGTCCATGCATTAAAAGTGACAGGACATCACGGCTTTCCCGTAATCGACGAACCGCCTTTAACGGATGCTCCCGAGTTATGCGGTTTGGTGTTGAGGTCTCATCTGCTAGTACTTCTCAAGCACAAGACATTGTTCACTAGGAAGAGGATTATGACAAGGTCTACCATTATTAAAAAGTTGAAGGCAAGTGATTTTGCGAAACCGGGTTTAGGGAGAGGGATAAGTGTGAAAGATTTAGAGTTTTCAGAAGAGGAAATGGAAATGTTTGTTGATCTTCATCCAATAACTAACAAATCTCCGTATACTGTTGTTGAAACAATGTCTCTTGCAAAAGCTGCTCTTCTTTTTAGGGAACTTGGACTCAGACACTTGCTAGTTGTGCCAAAGATACCAGGAAGGCCTCCAATTGTTGGGATCCTAACAAGACATGATTTCATGCCAGAGTATATCTTGGGGCTGTTCCCCAACTTGAATCGTCACAAGTAG 2307 0.4473 MDQSEADERIEIGDGDDGDHHHKQPLLVRRRTNASSQLAIVGANKSPIQSLDYEMIENDLLKQDWRSRTKVEIYQYVVLKWTLALLIGLITGLVGFFNNLGVENIAGFKLLLTNNLMINQKYHQAFAAYFGCNMILGVGAAALCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSILGVAGGFVVGKEGPMVHTGACIANLLGQGGSRKYRLTWRWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGLMQFCHQGEGKCGLFGEGGLIMFDVNSLEPAYTTPDLLAVIFLGVIGGLMGSLYNYLVDKVLRTYTTINGKGPIFKILLVMVISFMTSCIRFGLPLLSKCVPCSGECPNSPSTGFSMHYDSFQCPPNHFNDLSSLLFTTNDDAIRKLFIDSSESANAAFQLSSLIIFFVAIYLLGIVTYGVAIPSGLFIPVILAGASYGRLVGTVLNPFTDLDAGYFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLVSKTVADCFNKGVYDQIVMLKGLPFMEAHAEPYMKNLVAGDVVSGPLFTFSGIEKVGTIVHALKVTGHHGFPVIDEPPLTDAPELCGLVLRSHLLVLLKHKTLFTRKRIMTRSTIIKKLKASDFAKPGLGRGISVKDLEFSEEEMEMFVDLHPITNKSPYTVVETMSLAKAALLFRELGLRHLLVVPKIPGRPPIVGILTRHDFMPEYILGLFPNLNRHK* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g5102 768 PRINTS Plant CLC chloride channel signature 54 62 IPR002251 GO:0005247|GO:0006821|GO:0016020
Psa1g5102 768 PRINTS Plant CLC chloride channel signature 265 273 IPR002251 GO:0005247|GO:0006821|GO:0016020
Psa1g5102 768 PRINTS Plant CLC chloride channel signature 279 289 IPR002251 GO:0005247|GO:0006821|GO:0016020
Psa1g5102 768 PRINTS Plant CLC chloride channel signature 422 438 IPR002251 GO:0005247|GO:0006821|GO:0016020
Psa1g5102 768 CDD ClC_6_like 49 574 - -
Psa1g5102 768 Pfam Voltage gated chloride channel 137 555 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Psa1g5102 768 CDD CBS_pair_voltage-gated_CLC_euk_bac 587 755 - -
Psa1g5102 768 Pfam CBS domain 704 752 IPR000644 -
Psa1g5102 768 SMART cbs_1 706 757 IPR000644 -
Psa1g5102 768 SMART cbs_1 594 647 IPR000644 -
Psa1g5102 768 Gene3D Clc chloride channel 72 574 - -
Psa1g5102 768 SUPERFAMILY Clc chloride channel 58 576 IPR014743 -
Psa1g5102 768 Gene3D - 575 758 IPR046342 -
Psa1g5102 768 ProSiteProfiles CBS domain profile. 703 763 IPR000644 -
Psa1g5102 768 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 17 768 - -
Psa1g5102 768 SUPERFAMILY CBS-domain pair 578 754 IPR046342 -
Psa1g5102 768 PRINTS Chloride channel signature 149 166 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Psa1g5102 768 PRINTS Chloride channel signature 180 199 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Psa1g5102 768 PRINTS Chloride channel signature 244 263 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Psa1g5102 768 PRINTS Chloride channel signature 473 493 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Psa1g5102 768 PRINTS Chloride channel signature 505 521 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Psa1g5102 768 PRINTS Chloride channel signature 523 542 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Psa1g5102 768 PRINTS Chloride channel signature 561 575 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Psa1g5102 768 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 17 768 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g5102 Psa-Chr1 370757258 370761389 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g5102 8 765 Ion Channels AT5G49890 74.443 0.0 1110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g5102 K05016 - cpap:110814786 1092.41