Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g5100 ATGGGTTGCATATGCTCCAAAGGAAAATCCACTCATGATTTCGTCGTCCAAAATCCCAGAGAATTCAAGACTAAGAAATCATCAAAGCGTGTCGTTGTCACTAATAGGGAAAACGATGCAACTGCACACCTCATCTCAAACACGTGTCGCGATTCATCCGATGAAGGAGAGAAAGAAAAGGAAATTCATATTGCCAAGGGAGGAATAGGATCAGAACAAGAAATTAAGAAGATAATTACAAGTTTCAGTGTCAAGAGCAATGGCGAAAGAGGGCCGATTGTTGTTGAAGGCTGGCCTTCTTGGCTCACTGCTGTTGCCGGCGAAGCCATCGTTGGTTGGGTTCCTCGTAGAGCAGACTCTTTTCACAAATTGGATAAGATTGGGCAAGGAACTTATAGCAGTGTTTACCGAGCTCGTGATCTCGAGACTAACAAAATTGTTGCTTTGAAGAAAGTGAAATTTGCTAATATGGATCCTGAAAGTGTTCGTTTTATGGCCAGAGAAATTATTCTTCTGCGAAAGCTTGATCATCCCAATGTCATGAAACTTGAAGGAATTATTACTTCAAGGCTTTCTGGTAGTTTGTACCTTATTTTCGAATATATGGAACATGATCTTACTGGCCTTGCAACATTGCCTAGCAACAAGTTTACCGAATCACAGATCAAATGTTATATGCAACAGCTTCTTCGCGGTCTTGAGCATTGTCACAGTCGCGGTGTTATGCACCGTGACATCAAGGGCTCAAATCTTCTGCTTGACAATAATGGCAATCTGAAGATTGGAGATTTTGGACTTGCAACTTTGTTTCAGCCATCTCGAGAGCAGCCTTTAACAAGTCGTGTAGTAACCTTGTGGTACCGGCCACCTGAACTTTTGCTTGGAGCTACAAACTATGACGTTGCTGTGGATTTGTGGAGTGCTGGTTGTATTCTTGCAGAACTGTTAGCCGGAAAACCTATAATGCCTGGACGAACTGAGGTGGAGCAACTGCATAAAATCTTCAAACTTTGTGGATCTCCTTCTGAAGAATACTGGAAGAAGACAAAGCTACCACATGCGACAATTTTTAAACCTCAACAACCTTACAAACGTATTGTTTCTGAGACATTCAAGGATTTTCCTTCATCAGCACTGAGTCTCTTGGAGGTCCTACTTGCTATTGAACCAAAAGATCGAGGAACTGCAACTTCAGCACTTCAGAATGAGTTCTTCACATCAAAGCCACTTCCTTGTGATCCATCGACTTTGCCAAAGTACTCACCGAGTAAGGAGTTTGATGCCAAACTTCGTGAAGAGGAAGCTAGAAGACGACGAGTAGCAAATAAAGGACATGGACAGGAATTATCTGGAAGGAGTTTTAAAGAGTCTAAGGTTGTACCAGCACCTGACGCTAATGGTGAGCTTCAGGCTTCCATAGAGAAGAGACGAGGGCAGTGTAATTCAAAATGCATCAGTGAGAAGTACAATCCTGAAGAGGAAGGAAGTTATGGCTTCCCTCTTGAACCTGCTAAGGCAGTAGCCCATAATACCTTATCTCATTCAGGCCAGTTAATGCATCCAGGTGCATATGGATCGTCATGCAATATGAATTTGAAAGAGGAAATTGTTCTTGCCGCCCCTGATCGTGTCTTTACATCAAAAAACTCTAAACTGAGAAAACAAAATTCGTCCTGGCAAGGTAGCACTGCACAGTTGTCAAGATTTTCTAATTCAGTTGCAGTTCGAGGTGATTCACAGCTTGATATGAGTAAAGACTGTAGTTTGAATTCACAGTGGCAAGAAGATCACTTTGATTTGAGATATAGTCATTTGACTGATGGTGAGTCCAATCAAATGCTGGATGAAACCAAATATTTACGCAAGAAAGACTTCCATCTATTGGGAAAGGATCGCGCCATGGGTAATGCTCCCAAAAATGGGCACATAAACTATTCTGGCCCCCTGCTGCTTCCAGAGGCTAATTTTGAAGAGATCCTTAAGGAGCATGAAAGACAAATCCAACAAGCTGTGCGCAAAGCTCGTCTGGTCAAGGACAAGAATAAAAAGGCCGCGAGTGAGATTGGGCAATCTGAGACACTAGTTCACCAAATGAGATATGGCAAGTCACATATCAAAGAGTTTTGA 2127 0.4236 MGCICSKGKSTHDFVVQNPREFKTKKSSKRVVVTNRENDATAHLISNTCRDSSDEGEKEKEIHIAKGGIGSEQEIKKIITSFSVKSNGERGPIVVEGWPSWLTAVAGEAIVGWVPRRADSFHKLDKIGQGTYSSVYRARDLETNKIVALKKVKFANMDPESVRFMAREIILLRKLDHPNVMKLEGIITSRLSGSLYLIFEYMEHDLTGLATLPSNKFTESQIKCYMQQLLRGLEHCHSRGVMHRDIKGSNLLLDNNGNLKIGDFGLATLFQPSREQPLTSRVVTLWYRPPELLLGATNYDVAVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKTKLPHATIFKPQQPYKRIVSETFKDFPSSALSLLEVLLAIEPKDRGTATSALQNEFFTSKPLPCDPSTLPKYSPSKEFDAKLREEEARRRRVANKGHGQELSGRSFKESKVVPAPDANGELQASIEKRRGQCNSKCISEKYNPEEEGSYGFPLEPAKAVAHNTLSHSGQLMHPGAYGSSCNMNLKEEIVLAAPDRVFTSKNSKLRKQNSSWQGSTAQLSRFSNSVAVRGDSQLDMSKDCSLNSQWQEDHFDLRYSHLTDGESNQMLDETKYLRKKDFHLLGKDRAMGNAPKNGHINYSGPLLLPEANFEEILKEHERQIQQAVRKARLVKDKNKKAASEIGQSETLVHQMRYGKSHIKEF* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g5100 708 MobiDBLite consensus disorder prediction 416 463 - -
Psa1g5100 708 PANTHER KINASE CDK9, PUTATIVE-RELATED 73 678 - -
Psa1g5100 708 PANTHER CELL DIVISION PROTEIN KINASE 73 678 - -
Psa1g5100 708 MobiDBLite consensus disorder prediction 424 452 - -
Psa1g5100 708 Pfam Protein kinase domain 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g5100 708 Gene3D Phosphorylase Kinase; domain 1 108 203 - -
Psa1g5100 708 ProSiteProfiles Protein kinase domain profile. 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g5100 708 Coils Coil 653 680 - -
Psa1g5100 708 CDD STKc_CDK9_like 121 405 - -
Psa1g5100 708 Gene3D Transferase(Phosphotransferase) domain 1 204 444 - -
Psa1g5100 708 SUPERFAMILY Protein kinase-like (PK-like) 114 413 IPR011009 -
Psa1g5100 708 SMART serkin_6 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g5100 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Psa1g5100 708 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g5100 Psa-Chr1 370710112 370715009 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g5100 113 461 Core Cell Cycle Gene Families AT5G10270 49.451 2.93e-115 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Psa1g5100 Pkinase 3.8e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g5100 - - cam:101495256 1040.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g5100 1 370710112 370715009 Psa1g5100 1 370710112 370715009 ECH