Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g5093 ATGGCTTCTGCTAGCCTTGGAAGTGGAAATGGAAATGGTGGTGTTGGTAGTTCTAGGTCTGCTTTAAGAGGTTCTTCAAGTTCTGTTGATTGGCTTGGGAGAGAGATGCTTGAGATGAGGCTCAGAGATAAAGTTGAGCATGACCATGATGACGATGATGATGGCAGGGAGAGTGAGCCTGATATCATTGATGGTGTGGGTGCTGAAACAGGACATGTAATACGAACCAGCATTGGTGGACGAAATGGTCAATCTAAGCAGAATGTTAGTTATATTGCGGAACACGTAGTTGGGACGGGCTCTTTTGGCACTGTTTTTCAGGCAAAATGTAGAGAAACAGGAGAGATTGTTGCCATCAAGAAGGTTCTCCAGGACAAGCGTTACAAGAATAGAGAGTTACAGATTATGCAAATGCTGGACCATCCAAATATTGTCGCACTGAGGCATTGTTTCTTTTCGACGACCGACAAAGAAGAGCTTTACCTGAATCTTGTACTAGAATACGTTCCTGAAACCGTGAATCGTATTGCGAGGAACTATAGCAGGATTAACCAGCGAATGCCTTTAATATACGTGAAACTTTATACGTACCAGATATGCAGAGCCCTTGCTTACATACATAATTGCATTGGAATCTGTCATCGCGACATCAAACCTCAGAACCTACTTGTGAACCCACACACTCATCAGCTTAAACTATGTGATTTTGGGAGTGCAAAAGTGTTGGTGAAAGGAGAACCTAATGTTTCATATATTTGTTCAAGATACTATCGTGCCCCAGAACTTATATTTGGTGCCACTGAATATACAACTGCCATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGCCCTTGTTTCCTGGAGAGAGTGGAGTTGATCAGCTGGTTGAAATCATCAAGGTTTTGGGAACTCCTACAAGGGAAGAGATAAAGTGCATGAACCCAAATTATACTGAATTCAAGTTTCCGCAGATAAAACCTCATCCATGGCACAAGGTCTTTCAGAAACGTTTACCCCCAGAAGCAGTGGATCTTGTCTGTAGGTTCTTTCAGTACTCTCCTAATTTGAGATGCACTGCTTTGGAAGCTTGCATTCACCCCTTCTTTGATGAATTGAGGGACCCAAGCACCCGTCTTCCCAATGGTCGCCCACTGCCTCCGTTGTTTAATTTCAAACCTCAGGAACTTTCTGGTATTCCACCCGATGTCATCAACCGGCTTATTCCAGAACATGCCCGTAAACAGAACTTATTTATGGCTTTGCACACCTAG 1290 0.4318 MASASLGSGNGNGGVGSSRSALRGSSSSVDWLGREMLEMRLRDKVEHDHDDDDDGRESEPDIIDGVGAETGHVIRTSIGGRNGQSKQNVSYIAEHVVGTGSFGTVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALRHCFFSTTDKEELYLNLVLEYVPETVNRIARNYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPSTRLPNGRPLPPLFNFKPQELSGIPPDVINRLIPEHARKQNLFMALHT* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g5093 429 ProSitePatterns Protein kinases ATP-binding region signature. 97 121 IPR017441 GO:0005524
Psa1g5093 429 ProSiteProfiles Protein kinase domain profile. 91 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g5093 429 Gene3D Phosphorylase Kinase; domain 1 76 170 - -
Psa1g5093 429 MobiDBLite consensus disorder prediction 1 27 - -
Psa1g5093 429 MobiDBLite consensus disorder prediction 42 66 - -
Psa1g5093 429 SUPERFAMILY Protein kinase-like (PK-like) 90 402 IPR011009 -
Psa1g5093 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Psa1g5093 429 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 8 426 - -
Psa1g5093 429 Pfam Protein kinase domain 93 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g5093 429 Gene3D Transferase(Phosphotransferase) domain 1 171 419 - -
Psa1g5093 429 CDD STKc_GSK3 86 378 IPR039192 -
Psa1g5093 429 PANTHER SHAGGY-RELATED PROTEIN KINASE DELTA-RELATED 8 426 - -
Psa1g5093 429 SMART serkin_6 91 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g5093 Psa-Chr1 370561556 370568978 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g5093 97 383 Core Cell Cycle Gene Families AT1G76540 35.254 1.03e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Psa1g5093 Pkinase 9.9e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g5093 K03083 - gmx:100799387 797.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g5093 1 370561556 370568978 Psa1g5093 1 370561556 370568978 ECH