Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g5090 ATGGAGAAAATGGAGGATGAATCTCCCAGGAATAGAGTCAAATTCCTTTGCAGTTATGGCGGAAAGGTTCTTCCTAGGCCCTCCGATGGAGTCCTTAAGTATGTAGGCGGCGAGACTCGCGTCATTTGTATTCCCCGCGACGCCACTTTCGCAGATATGATGAAGAAGGTGAGTGGCGTGGTTGATGGCGAGGTGGTGTTGAAGTACCAGGTGATTCCTGAAGAACTTGATACCTTGGTGTCTGTTAGAACAGAAGATGATTTGAAGCACATGATTACGGAACTTGATCGCCACGATAGTAGTGGATCATCATTGCTTCGCACATTTCTGTTCCCTTTGAAGCCATTGATAGTTGACAACCAGAGTCAGATGCAAATGCAACAAGCAGCACCACATCCACTTCCCGTTGAACCATATTTCTTAGAACAGCGTTACCTTGATGCCATCAACGGAATCATACGCCCAAGCCCCGGCTCTAAATATGCGGCTTGCTCTACGTGTTCTTCGCCAAAATCAACCTCTCCAGATGGATGTACTAGCGGGGAATCACCGTTCCACTACCAAGTCTCGCAAGAAGCTTACAGCAACAGCGGCATAACACCTCCAGCAGCCAATGGCAATGCGATCCCAAACGCGTCAAATCCGACACCTCGTTCTCCATCCTCGACTTCGGTTCCAATACACTCACCTCATGCACTCGTCGAATCGAAGTCTCTCCGTTTTCTCCCTCTGCTCAAAACGGCACCTCCTCTCTCCAATCCATCACCGAACTCAACCCTTCCCTCTCATTCTCTCCGGCGGTCCCACCTCCGTCCACACACCCCGACTCCCCTTTCCCTTCCCCGACGCTTCCCCAGTGGAACTCAGTCCAATTCCGTCCCCGTTCCTTGTATTGCTACGGACTCCAGCTTCTCGTTAACCGTCTCGGAAGGTATAAGGAGCAGGACGGGTGATGGAACCTTTGAAAAGGATCTTCATTTACTTGTGACTAGAGAAGAAAACTGGGAACCAGAACCTTCTTACTTGGTTTCAAGGGACCTTGTACGCGCTGATGTGATTGAACATGCCCACCACCTGGAAGGTGGGAAGAACCCATTCCATACCATCAAGAGTCATCATAATGTTGATGGAAAGATTTCATTCAGTTCAATCAAAGATGCTGGCCCTATGAATGTAATATGGCTAAGCTTTTGCGCCAGTTTTCTTACCAAGGAATTGGAATGGGAATGGGAAGGATATCCCATCTCAGATGATATGAATATGATGACAGATAATATGAGTAGTAGCAGTAGTCAGAGGGGTATGAATTACTATTACTCTAATGCAACAGACCCCATAAGGTTATGCATACCATGA 1356 0.4786 MEKMEDESPRNRVKFLCSYGGKVLPRPSDGVLKYVGGETRVICIPRDATFADMMKKVSGVVDGEVVLKYQVIPEELDTLVSVRTEDDLKHMITELDRHDSSGSSLLRTFLFPLKPLIVDNQSQMQMQQAAPHPLPVEPYFLEQRYLDAINGIIRPSPGSKYAACSTCSSPKSTSPDGCTSGESPFHYQVSQEAYSNSGITPPAANGNAIPNASNPTPRSPSSTSVPIHSPHALVESKSLRFLPLLKTAPPLSNPSPNSTLPSHSLRRSHLRPHTPTPLSLPRRFPSGTQSNSVPVPCIATDSSFSLTVSEGIRSRTGDGTFEKDLHLLVTREENWEPEPSYLVSRDLVRADVIEHAHHLEGGKNPFHTIKSHHNVDGKISFSSIKDAGPMNVIWLSFCASFLTKELEWEWEGYPISDDMNMMTDNMSSSSSQRGMNYYYSNATDPIRLCIP* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g5090 451 Pfam PB1 domain 32 112 IPR000270 GO:0005515
Psa1g5090 451 SMART PB1_new 27 113 IPR000270 GO:0005515
Psa1g5090 451 Gene3D - 33 111 - -
Psa1g5090 451 PANTHER OS05G0427100 PROTEIN 5 238 - -
Psa1g5090 451 MobiDBLite consensus disorder prediction 247 292 - -
Psa1g5090 451 PANTHER OS05G0427100 PROTEIN-RELATED 5 238 - -
Psa1g5090 451 SUPERFAMILY CAD & PB1 domains 28 116 - -
Psa1g5090 451 MobiDBLite consensus disorder prediction 251 265 - -
Psa1g5090 451 CDD PB1_UP2 16 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g5090 Psa-Chr1 370501871 370506288 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g5090 4 172 MAP Kinase Kinase Kinase AT3G46920 37.791 1.60e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g5090 - - mtr:MTR_2g005700 275.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g5090 1 370501871 370506288 Psa1g5090 1 370501871 370506288 ECH