Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g5085 ATGATTCCATTTACCTTCATTTTCTTCACTCTGTTTTCTGTTCTGTTTTCCTCTGTTTTTTCATCCTCCTTGCTTACTGATTTTCATGCTTTGGTCAATCTTAAACAAGGCTTTAAATTCTCAAACCAAATTCTAAACTCATGGGAAGGTCCAAATTTCACTACAGTTTGTTCTTGGGGTGGAATTCAATGCCGCGAGAGTCGAATCGTCTCGGTCGACTTAACCGATTTGAATCTGTTTGGCTCTGTTTCGCCTTCAATCTCATCACTTGATAAACTCACACACCTTTCTCTAGCCGGAAACAACTTCACCGGAACCATTGACCTCACAAACTTAACCAATCTTCAGTTTCTAAACATCTCCAACAACAATTTCAGTGGTAACATGGATTGGAACTTCTCCACCATGCAAAACCTACAAGTCCTTGATGTCTATAACAACAATTTCACTTCATTGCTTCCATTAGGACTTCTTACCTTGAAGCAAAACCTCAAACACTTGGATCTAGGTGGTAACTTTTTCTTCGGCGAAATCCCGAAAAGATTCGGAGAATTCGCTTCTCTTGAGTATCTTTCACTGGCTGGAAATGATATCACAGGAAAAATCCCTGGTGAGTTAGGAAATCTAAGCAACTTGAGAGAAATTTACTTGGGCTATTACAATTCCTTTGAAGGTGGAATTCCGAAAGAGTTTCGAACTTTAACAAACCTTGTTCATATGGATCTTTCAAGCTGTGATTTAGATGGTTCAATCCCAAAAGAGTTAGGTGAATTGAAGAAACTCGATACACTTTACTTGCATATAAACCAGCTTTCAGGTTCATTACCAAAACATCTTGGTAACTTAACAAACCTTCTCTACCTCGATCTTTCGAGCAATGCGCTCACCGGTGAAATTCCATTTGAGTTCATCAATCTCAGAAATCTCAAGCTGTTGAATCTTTTCTTGAACAGGTTACATGGTTCTATACCTGATTACATTGCGGATTTTCCTGATTTAGACACACTTGGTTTATGGATGAACAACTTCACTGGTGAAATTCCATATAAACTTGGTCTCAATGGGAAGATTCAAGTGCTTGATTTGTCTTCTAATAAACTCACTGGTGTTATTCCACCTCATCTTTGTTCTTCAAACCAGCTTAAGATTTTGATTCTTCTTAACAATTTTCTCTTTGGTCCTATACCAGAAGGTTTAGGAACATGTTATAGTCTCACTAGAGTGAGATTAGGAGAGAATTATCTTAATGGAAGTATTCCAAATGGTTTTCTTTATCTTCCTAAGCTAAATTTAGCTGAGTTGAAGAACAATTACTTGTCAGGAACATTGTTAGAAAATGGCAACGGTTCGTCTTCGTTTTCTCAATCTCAATCTCAGCCTGTTTGTTTACAACAGCTTGATTTGTCGAACAATGCTTTGTCTGGTCCTTTACCGCATTCGCTCTCGAATTTCACTTCACTTCAAATACTTTTGCTTAGTGGAAACCAATTTTCGGGTCCGATTCCGAGTTCTATTGGAGGACTTAACCAAGTGTTGAAGCTTGACCTTAGTAGAAACTTGTTATCCGGTGAAATTCCGTCCGAAATCGGAAACTGTGTTCATCTTACCTACCTTGACATGAGCCAGAACAATCTTTCTGGCTCAATTCCGCAATCGTTTTCGGATATTCGTATTTTGAATTACTTGAACTTGTCTAGAAACCATTTGAACCAGACCATACCAAAGTCAATAGGAACAATGAAAAGCCTCACAGTTGCTGATTTCTCCTTCAACGAATTCTCCGGTAAATTGCCCGAATCAGGCCAATTTTCGTTCTTCAACGCGTCCGCGTTCGCGGGGAATCCTAAACTATGTGGCTCTCTATTGAACAATCCATGTAAGTTGACAGGAATGAAATCCACACCAGGAAAAAAAACCAATGCAGATTTCAAGCTGATATTCGCGCTCGGCCTATTGATGTGTTCTTTAGTCTTTGTTATCGCGGCCATTATAAAAGCCAAGTCATTCAAAAAGAATGGTCCTGGTTCTTGGAAGATGACTGCTTTCAAAAAGCTCGAGTTCACCGTTTCAGACATCCTCGAATGCGTGAAAGACGGCAACGTGATCGGAAGAGGAGGCGCAGGGATAGTTTACCACGGAAAAATGCCAAATGGTGTGGAAATTGCAGTAAAAAAACTACTCGGGTTCGGTGCAAATAGCCATGATCATGGTTTTAGAGCTGAAATTCAAACACTTGGAAACATAAGACACAGAAACATAGTGAGGCTACTTGCATTCTGTTCAAACAAAGAAACAAATCTTCTTGTGTATGAGTACATGAGAAATGGAAGCTTAGGTGAAGCATTGCATGGAAAAAAAGGCGCATTCTTGAGTTGGAACTTTCGGTACAAGATATCTATTGATTCTGCTAAAGGACTATGCTATCTTCACCATGATTGTTCTCCATTGATCCTACACAGAGATGTGAAATCTAACAACATTTTGTTGAGTTCGAATTTCGAAGCACATGTTGCTGATTTCGGGCTAGCAAAATTCTTGGTTGATGGTGCCGCATCAGAATGCATGTCTTCCATTGCAGGATCATATGGTTACATTGCACCAGAATATGCATATACATTAAGAGTGGATGAAAAAAGCGATGTGTATAGTTTCGGAGTAGTTCTACTAGAACTTCTAACTGGTAAAAAACCAGTTGGTGATTTTGGAGAAGGTGTAGATCTTGTACAATGGTGCAAAAAAGCAACAAATGGAACAAGAGAACAAGTTATCGACATAATCGATTCAAGACTCATGGTTGTGCCAAAAGAAGAAGCCATGCACATGTTCTTCATTGCAATGCTATGTTTAGAAGAAAACAGTGTTCAAAGACCAACCATGAGAGAAGTTGTTCAGATGCTTTCTGAATTTCCAAGACAATCTTCTTCATGTTCTTCATCTTCTAGTATTAATCCACCAAGCAAAAACTTAATTCAGAATCATAAATTACCTTGTTCTCCTACTTTTAAACATGATCTTTTGGTTTAA 3024 0.3866 MIPFTFIFFTLFSVLFSSVFSSSLLTDFHALVNLKQGFKFSNQILNSWEGPNFTTVCSWGGIQCRESRIVSVDLTDLNLFGSVSPSISSLDKLTHLSLAGNNFTGTIDLTNLTNLQFLNISNNNFSGNMDWNFSTMQNLQVLDVYNNNFTSLLPLGLLTLKQNLKHLDLGGNFFFGEIPKRFGEFASLEYLSLAGNDITGKIPGELGNLSNLREIYLGYYNSFEGGIPKEFRTLTNLVHMDLSSCDLDGSIPKELGELKKLDTLYLHINQLSGSLPKHLGNLTNLLYLDLSSNALTGEIPFEFINLRNLKLLNLFLNRLHGSIPDYIADFPDLDTLGLWMNNFTGEIPYKLGLNGKIQVLDLSSNKLTGVIPPHLCSSNQLKILILLNNFLFGPIPEGLGTCYSLTRVRLGENYLNGSIPNGFLYLPKLNLAELKNNYLSGTLLENGNGSSSFSQSQSQPVCLQQLDLSNNALSGPLPHSLSNFTSLQILLLSGNQFSGPIPSSIGGLNQVLKLDLSRNLLSGEIPSEIGNCVHLTYLDMSQNNLSGSIPQSFSDIRILNYLNLSRNHLNQTIPKSIGTMKSLTVADFSFNEFSGKLPESGQFSFFNASAFAGNPKLCGSLLNNPCKLTGMKSTPGKKTNADFKLIFALGLLMCSLVFVIAAIIKAKSFKKNGPGSWKMTAFKKLEFTVSDILECVKDGNVIGRGGAGIVYHGKMPNGVEIAVKKLLGFGANSHDHGFRAEIQTLGNIRHRNIVRLLAFCSNKETNLLVYEYMRNGSLGEALHGKKGAFLSWNFRYKISIDSAKGLCYLHHDCSPLILHRDVKSNNILLSSNFEAHVADFGLAKFLVDGAASECMSSIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELLTGKKPVGDFGEGVDLVQWCKKATNGTREQVIDIIDSRLMVVPKEEAMHMFFIAMLCLEENSVQRPTMREVVQMLSEFPRQSSSCSSSSSINPPSKNLIQNHKLPCSPTFKHDLLV* 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g5085 1007 Gene3D Ribonuclease Inhibitor 133 219 IPR032675 -
Psa1g5085 1007 Gene3D Ribonuclease Inhibitor 280 356 IPR032675 -
Psa1g5085 1007 SMART LRR_typ_2 306 330 IPR003591 -
Psa1g5085 1007 SMART LRR_typ_2 282 305 IPR003591 -
Psa1g5085 1007 SMART LRR_typ_2 556 580 IPR003591 -
Psa1g5085 1007 SMART LRR_typ_2 185 209 IPR003591 -
Psa1g5085 1007 SMART LRR_typ_2 508 532 IPR003591 -
Psa1g5085 1007 SMART LRR_typ_2 136 159 IPR003591 -
Psa1g5085 1007 SMART LRR_typ_2 234 258 IPR003591 -
Psa1g5085 1007 ProSiteProfiles Leucine-rich repeat profile. 138 159 IPR001611 GO:0005515
Psa1g5085 1007 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 7 975 - -
Psa1g5085 1007 Pfam Leucine rich repeat 163 219 IPR001611 GO:0005515
Psa1g5085 1007 Pfam Leucine Rich Repeat 356 376 IPR001611 GO:0005515
Psa1g5085 1007 Pfam Leucine Rich Repeat 534 554 IPR001611 GO:0005515
Psa1g5085 1007 Pfam Leucine Rich repeat 282 298 IPR001611 GO:0005515
Psa1g5085 1007 ProSiteProfiles Protein kinase domain profile. 696 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g5085 1007 Gene3D Phosphorylase Kinase; domain 1 661 772 - -
Psa1g5085 1007 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Psa1g5085 1007 Gene3D Ribonuclease Inhibitor 357 632 IPR032675 -
Psa1g5085 1007 Pfam Protein tyrosine and serine/threonine kinase 699 966 IPR001245 GO:0004672|GO:0006468
Psa1g5085 1007 Gene3D Ribonuclease Inhibitor 26 132 IPR032675 -
Psa1g5085 1007 Gene3D Ribonuclease Inhibitor 220 279 IPR032675 -
Psa1g5085 1007 PANTHER UNNAMED PRODUCT 7 975 - -
Psa1g5085 1007 SUPERFAMILY L domain-like 356 619 - -
Psa1g5085 1007 SMART serkin_6 696 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g5085 1007 SUPERFAMILY Protein kinase-like (PK-like) 687 966 IPR011009 -
Psa1g5085 1007 SUPERFAMILY RNI-like 71 436 - -
Psa1g5085 1007 Gene3D Transferase(Phosphotransferase) domain 1 773 985 - -
Psa1g5085 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 817 829 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g5085 Psa-Chr1 370293248 370297555 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g5085 16 998 Receptor kinase-like Gene Family AT5G65700 55.856 0.0 1075
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Psa1g5085 PK_Tyr_Ser-Thr 1.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g5085 - - cit:102612034 1431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g5085 1 370293248 370297555 Psa1g5085 1 370293248 370297555 ECH