Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g5078 ATGGAGAAATACGAGCTGGTTAAGGATATAGGTTCTGGGAATTTTGGTGTTGCGAGACTCATGCGTCACAAAGATACCAAAGAACTCGTTGCCATGAAATTCATCCAACGTGGTCACAAGATTGATGAGAATGTTGCTAGGGAAATAATTAACCATAGAAGTCTTCGTCATCCTAATATTATTCGCTTCAAAGAGGTGGTTTTGACTCCTACTCATCTTGGTATAGTTATGGAGTATGCTGCTGGTGGAGAGCTCTTTGAGCGAATTGTCTCTGCTGGAAGATTCAGTGAAGACGAGGCTCGATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGCCATTCCATGCAAATCTGCCATCGAGACTTGAAACTTGAGAACACATTATTGGACGGTAGCCCTGCCCCACGGCTCAAAATTTGCGATTTTGGTTATTCTAAGTCCTCTCTGCTGCATTCTAGACCTAAATCAACAGTGGGAACTCCAGCTTACATAGCACCTGAGGTTCTTTCACGTAAAGAATATGATGGAAAGTTGGCAGATGTATGGTCATGTGGAGTGACTCTTTATGTAATGCTGGTGGGAGCATACCCATTTGAGGACCAAGAGGATCCAAAAAATTTCAGGAAAACCATTAATAAAATTCTGGCTATTCAATACCAGATTCCGGATTATGTTCACATATCTGAAGATTGTAAACATCTGCTGTCTCACATTTTCGTGACAAGTCCAGCTAAGAGAATCACCATTAAGGAAATCAAGTCTCATCCATGGTTTTTAAAGAACTTGCCTCGAGAATTGACTGAAATGGCTCAAGCTGTTTACTACAAAAAAGAAAATCCAACTTATTCTCTTCAGAGCATTGAAGACATTATGAATATTGTTGAGGAAGCTAAATCCCCGTCTCAAGTGTCTAGGTCAGTTGGGGTTTTTGGCTGGGGAGGAGTAGAAGACGACGAAGAAACAAAAGAAGCCGAAGCTGAGGTGGAAGAAGATGAATATGAAAAGAGAGTCAAGGAAGCACAGGAAAGTGGAGAATTCAATTTCAACTAA 1056 0.4119 MEKYELVKDIGSGNFGVARLMRHKDTKELVAMKFIQRGHKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLGIVMEYAAGGELFERIVSAGRFSEDEARYFFQQLISGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRKEYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTINKILAIQYQIPDYVHISEDCKHLLSHIFVTSPAKRITIKEIKSHPWFLKNLPRELTEMAQAVYYKKENPTYSLQSIEDIMNIVEEAKSPSQVSRSVGVFGWGGVEDDEETKEAEAEVEEDEYEKRVKEAQESGEFNFN* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g5078 351 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Psa1g5078 351 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Psa1g5078 351 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g5078 351 SUPERFAMILY Protein kinase-like (PK-like) 1 302 IPR011009 -
Psa1g5078 351 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Psa1g5078 351 Coils Coil 318 345 - -
Psa1g5078 351 PANTHER SERINE/THREONINE KINASE 2 345 - -
Psa1g5078 351 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g5078 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Psa1g5078 351 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2A-RELATED 2 345 - -
Psa1g5078 351 MobiDBLite consensus disorder prediction 318 351 - -
Psa1g5078 351 CDD STKc_SnRK2 3 259 - -
Psa1g5078 351 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g5078 Psa-Chr1 370115152 370118262 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g5078 3 263 CBL-interacting serine-threonine protein kinases AT4G24400 43.704 1.97e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Psa1g5078 Pkinase 9.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g5078 K14498 - gmx:100812259 628.246