Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g5076 ATGCGACGGGTTTCCTCAACTTTTCCCTCTTCTCCATATTTCAAATCGCTCAAACCACCAATTGAATGCGTTGTTGTTCGTATTCAAATCATGCAACAAGGTAATTCATCCAAGGGTGTTCAGATTCCGCAGCTCAATTGGTTGCAGCATGCCAATGCTCACCAGAATTTCTCTTCCCAGGCCAAATTTTTGAACTCCAATTTCCTCTTTTCTGTCTCGACTAAGAAACCACAAGACGGGTCTGGTAATGGCAGGTTTGTAGTTCGACAAGGTCAAAATATTCCAAGTTCACAAAGAGGACAGGTTGATAAGGCCTGGCTTGCTCTTTCAAACCTACAAATATCTAGCAGGAATTATGTCCAACCCGGAAAACATGTTAAAGTTACCCCTCAGTTTCACAACGACGGGACAACAGCGTCCTTCCAAGGAAGCTATGAGAATGACACGCTGAACCGTTTTAATGTCACAACAACTCCAGCTGTCATTAATCATACCTCTCAGGTTTTAGATAGCTCAGTGAACAATCACACAAAGTACACTAGCCAACCCAAAGAGTCTACAAAATTTGTAGCTGATAATATTAATATTGATGACGATGACATACTCGAGAGCATTGATGTTGACCAAATTGTTGAGAAATACCAGTCCTCATGCACTCCTCAACCCCCGATGTCAAAGTTTCCTTCTATTGCACCAACTCCAGGTAGGGATAACTTTGCCAGACAGGGAGATACTTTTTTTCCACCAGAGCTGTGCCTGGATTGCATACACGGATACAAGTTAGGGCTATGCCCTGAAGCAGCAAGTCATTTGCAGGAGTTCAAGGATAATCTTATTGCAATCTCTAATGAACTGCTTGACAATGTTGAAAATCTCAGTTCTGTGCAGATAGAAAAGCTTCGCCAAGACAGGTCACGGCTGAATAAGCAAATTCAACAGCTTGAAAAATATATTCATTCCAGTAATCTTGAAGAAGAAAGACAAAAGTCACATCTTGCTACATCCATGGCACCACCTACATCATCCGTGTATGAAACACCCCAGCGAAATGTCATCAGCAATGGGCCAAATGGATATGATGCCCAGCCTTATATAGGTAATGGGACATATGAGCCATCGCACCAGTCTTCGTTCTTTTCTGCAGACATGTCTGGCATGCCGCCAGGTCCAGTAGAGAGGGAGCCATTCATCCCAAAGATTATTGATGTTAATTACAGTGAAGGTTCTGGAGATAAACAGTGGAGCAGTCGGGATTTTTCTTGGACTAGAGAATTAGAGGTTAATAACAAAAAAGTATTTGGAAATCCCTCATTTCGCCCCAATCAAAGAGAGATTATTAATGCCACGATGAAGGGATGTGATGTTTTTGTTTTGATGCCCACCGGTGGAGGAAAAAGTTTGACCTATCAGCTACCAGCTCTTATTAATCCAGGCATAACATTAGTAATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCACCTATTGCAGGCAAATATACCTGCTACTTACTTAAGTGCCAATATGGAATGGACTGAACAACAGGAGATTCTTAGAGAACTTAATTCTGATTATTGTAAATATAAGTTGTTATATGTGACACCCGAAAAGATTGCGAGAAGTGATAATCTTCTGCGACACTTGGAGAGTTTATATGTTCGTGAGTTGCTTTCGAGGATTGTAATTGATGAGGCTCACTGTGTGAGTCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGTGTATTGAAACAGAAATTCCCAAATACTCCTGTTTTAGCTTTAACAGCTACAGCAACAGCTAGTGTAAAAGAAGATGTTGTGCAAGCACTCGGTCTTGTTAACTGCATTGTTTTTCGGCAAAGTTTTAATCGCCCAAATTTACGGTATTCCGTTGTTCCCAAGACCAAAAAGTGTTTAGAGGATATTGACAAATTTATTAGGGAAAATCATTTTGATGAATGTGGCATCATCTATTGTCTTTCACGAATGGACTGTGAAAAGGCTGCTGAAAAATTACAGGAATATGGGCATAAATGTGCATTTTATCACGGGAATATGGATCCTGCTCAACGTTCTTTTGTTCAAAAGCAATGGAGCAAAGATGAAATCAATATAATTTGTGCTACTGTTGCATTTGGAATGGGGATAAACAAACCCGATGTCCGCTTTGTAATCCATCACTCCCTCCCAAAATCTATTGAAGGTTATCATCAGGAATGTGGACGAGCTGGTAGAGATGGCCAGCCTGCATCCTGTGTATTATATTATAGCTACAGTGACTATATTCGAGTTAAGCATATGTTAAGCGCAGGAACTGTGGAGCAAAGTCCCATGACATCTGGATACAGTCGTTTAAATGCGACTAATCCAGGAAGGTTACTGGAGACAAACACCGAAAACCTTTTGCGCATGGTCAGTTATTGTGAAAATGATGTTGATTGTCGGCGCTTTATTCAGCTCGTTCATTTTGGGGAGAAGTTTGATTCTTCAACCTGTCAGAAAACATGTGATAATTGCATGAAGGTCACAAGTTTCATTGAGAAGGATGTTACCGAAATGGCAAAACAATTGGTTGAACTCGTTAAGCTAACGGGACAGAAGGTCTCGGCATCTCATATATTAGAGGTTTATCGTGGTTCCTTAAGCCAAATGGTCAAGAAACACCGACACGAGACTGTGCGCCATCATGGTGCTGGGAAGCATCTAGCGAAGGGTGAGGCTTCCCGTATCTTGCATCATCTTGTTGTTGAGGATTTTCTCGCGGAGGAGGTAAAGAAAAGTGATTTTTATGGATCAGTATCATCAGTATTGAAGGTAAATGAGCAGAAGGTCCGAACTGTATTGTTTGGTGGGCAAAGAATTATATTGAGATTCCCATCTTCTGTGAAAGCATCAAAGCCTGTGAAATGTGATTTAACTCCAGCCAGAGGTTCTCTGACATCTGCGAAGCTGAATCTTCCTATTGATATTCCTGACGAACCTCAAACTGAAATAGACTTGGATCTATCAGCTAAGTTGTACACTGCTTTGCGGATGTTGCGGACAGCTCTCTGTAGAGAAGCTGGAGAGGGTGTTTATGCTTATCACATATTTGGCAATGCTACGTTGCAGCAGATAAGCAAGAAAGTACCGAGAACAAAGGAGGAACTTCTTGATATCAATGGCATTGGCAAGATTAAAGTAAACAATTATGGGGACCGGTTACTGGAAACCATTGAGAATACCATACATGAATACTACAATACAGATAAAAACAGTAGTGGCAGCAAAGGCAGCACTGATTCGGCCAAAAGAAGACGAGAGGCAAACAGAGACCCGGATTCAAATGCTGAGGATGATGAGGCCTTAATCCAAATTACTGGTCGCACCAAGAAAAGGACGGTAAAGAGACAAATTAGAAAGGTTGTGATTTATGATTCAGAAGAAGAGGAGGATTATTTCCATGGGTGCCTTGATGAGGACCTAGACTGTGTCAACATTGATAACATCGTATTAGATAAAGCACCTGGTACAAATCCTGCAGGAAGAGTACTACCTCAATGGACAGTATCTTGA 3570 0.4126 MRRVSSTFPSSPYFKSLKPPIECVVVRIQIMQQGNSSKGVQIPQLNWLQHANAHQNFSSQAKFLNSNFLFSVSTKKPQDGSGNGRFVVRQGQNIPSSQRGQVDKAWLALSNLQISSRNYVQPGKHVKVTPQFHNDGTTASFQGSYENDTLNRFNVTTTPAVINHTSQVLDSSVNNHTKYTSQPKESTKFVADNINIDDDDILESIDVDQIVEKYQSSCTPQPPMSKFPSIAPTPGRDNFARQGDTFFPPELCLDCIHGYKLGLCPEAASHLQEFKDNLIAISNELLDNVENLSSVQIEKLRQDRSRLNKQIQQLEKYIHSSNLEEERQKSHLATSMAPPTSSVYETPQRNVISNGPNGYDAQPYIGNGTYEPSHQSSFFSADMSGMPPGPVEREPFIPKIIDVNYSEGSGDKQWSSRDFSWTRELEVNNKKVFGNPSFRPNQREIINATMKGCDVFVLMPTGGGKSLTYQLPALINPGITLVISPLVSLIQDQIMHLLQANIPATYLSANMEWTEQQEILRELNSDYCKYKLLYVTPEKIARSDNLLRHLESLYVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGVLKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLRYSVVPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKAAEKLQEYGHKCAFYHGNMDPAQRSFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQPASCVLYYSYSDYIRVKHMLSAGTVEQSPMTSGYSRLNATNPGRLLETNTENLLRMVSYCENDVDCRRFIQLVHFGEKFDSSTCQKTCDNCMKVTSFIEKDVTEMAKQLVELVKLTGQKVSASHILEVYRGSLSQMVKKHRHETVRHHGAGKHLAKGEASRILHHLVVEDFLAEEVKKSDFYGSVSSVLKVNEQKVRTVLFGGQRIILRFPSSVKASKPVKCDLTPARGSLTSAKLNLPIDIPDEPQTEIDLDLSAKLYTALRMLRTALCREAGEGVYAYHIFGNATLQQISKKVPRTKEELLDINGIGKIKVNNYGDRLLETIENTIHEYYNTDKNSSGSKGSTDSAKRRREANRDPDSNAEDDEALIQITGRTKKRTVKRQIRKVVIYDSEEEEDYFHGCLDEDLDCVNIDNIVLDKAPGTNPAGRVLPQWTVS* 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g5076 1189 CDD DEXHc_RecQ 429 628 - -
Psa1g5076 1189 ProSiteProfiles Rhodanese domain profile. 661 696 IPR001763 -
Psa1g5076 1189 Pfam DEAD/DEAH box helicase 440 608 IPR011545 GO:0003676|GO:0005524
Psa1g5076 1189 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 4A 131 1155 - -
Psa1g5076 1189 SUPERFAMILY HRDC-like 1008 1080 IPR010997 GO:0000166|GO:0044237
Psa1g5076 1189 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 627 895 IPR027417 -
Psa1g5076 1189 Pfam RQC domain 851 967 IPR018982 GO:0006260|GO:0006281|GO:0043138
Psa1g5076 1189 PANTHER DNA HELICASE RECQ FAMILY MEMBER 131 1155 - -
Psa1g5076 1189 Coils Coil 297 324 - -
Psa1g5076 1189 ProSiteProfiles HRDC domain profile. 1005 1087 IPR002121 GO:0003676
Psa1g5076 1189 Gene3D - 852 962 IPR036388 -
Psa1g5076 1189 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 446 621 IPR014001 -
Psa1g5076 1189 SMART RQC_2 854 965 IPR018982 GO:0006260|GO:0006281|GO:0043138
Psa1g5076 1189 Gene3D - 402 628 IPR027417 -
Psa1g5076 1189 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 413 770 IPR027417 -
Psa1g5076 1189 MobiDBLite consensus disorder prediction 1098 1116 - -
Psa1g5076 1189 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 560 569 IPR002464 -
Psa1g5076 1189 Gene3D HRDC domain 1004 1093 IPR044876 -
Psa1g5076 1189 MobiDBLite consensus disorder prediction 1088 1119 - -
Psa1g5076 1189 Gene3D - 629 848 IPR027417 -
Psa1g5076 1189 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 430 905 IPR004589 GO:0004386|GO:0006310
Psa1g5076 1189 Pfam HRDC domain 1009 1077 IPR002121 GO:0003676
Psa1g5076 1189 Pfam RecQ zinc-binding 763 844 IPR032284 -
Psa1g5076 1189 SMART hrdc7 1005 1087 IPR002121 GO:0003676
Psa1g5076 1189 SMART helicmild6 671 752 IPR001650 -
Psa1g5076 1189 Pfam Helicase conserved C-terminal domain 645 751 IPR001650 -
Psa1g5076 1189 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 646 791 IPR001650 -
Psa1g5076 1189 CDD SF2_C_RecQ 629 761 - -
Psa1g5076 1189 SMART ultradead3 434 637 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g5076 Psa-Chr1 370098653 370107702 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g5076 660 769 Eukaryotic Initiation Factors Gene Family AT3G19760 23.636 4.06e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g5076 K10901 - gmx:100800006 1715.28