Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g5072 ATGGAAATCAATATCAGTTCATATGATTCTTCTAGCTTGAACAGAAAGCAACATGATGATACTAGACAAGATTATACATCATCTTCATCCTTCAATCTATCGAATGTTTCGAAACTCATTCTTCCACCACTTGGTGTTCCAAAAGAGAATCAAGTTTACTCAAAATGGATCATTTCACCAATGGATTCTAGATACAGGTGGTGGGAGAGTTTTATGGTTGTTTTGGTAGCATATACTGCATGGGTTTATCCATTTGAAGTTGCTTTCATGCATTCTTCAAATAGGGAACTCTACATTGTGGACAATATTGTTGATCTTTTCTTTGCCATTGATATTGTTATGACATTCTTTGTGGCATTCATTGATGGAACTACTCATCTACTTGTCAGAGATTCCAAGAAAATTGCTCTTAGGTACTTGTCATCATGGTTCATAATGGATGTAGCATCAACAATACCATACGAAGCAATAGGCTATATTGGCACCCACAAATTGAGTCTCCCTTACTTTCTCTTGGGAATGCTCAGATTTTGGAGAATCAGACGTGTCAAACAATTCTTCACAAGGCTTGAGAAAGACATCAGGTTCAGCTATTTCTGGGTCAGATGTGCTAGGCTTCTTTCTGTCACACTTTTTTCAGTTCATTGTGCTGGCTGTCTCTACTACATGCTAGCTGATAGATACCCTCAAAAAGGAAAGACATGGATTGGAGCTGTCATTCCAAATTTCAAAGAGACAAGTCCTAGAACCAGATACATTTCAGCCATCTACTGGTCCATCACTACCATGACTACTGTTGGTTATGGTGACCTTCATGCTGTCAACACCATGGAAATGATTTTCATTATTTTCTATATGCTCTTCAATCTTGGCCTAACTTCTTACTTAATTGGTAACATGACAAATCTTGTAGTCGAAGGAACTCGTCGCACTATGGAATTTAGAAATAGCATTGAAGCAGCCTCCAACTTTGTGTACCGAAATCGCTTGCCACCAATGTTAAAAGAACAGATTCTTGCTTACATGTGTTTGAGATTTAAGGCAGAAAGCTTGAATCAACACCAGTTAATTGAACAGCTGCCAAAGTCAATTTGCAAAAGCATTTGCCAACATTTGTTTTTTCCAACTGTAGAGAAAGTCTATCTCTTCAAAGGCGTCTCGAAAGAAACCCTTCTGTCCCTCGTTGCGAAAATGAACGCCGAATACATACCACCTAAAGAGGATGTTATAATGCAAAATGAAGCACCAGATGATGTTTACATTATAGTGTCAGGAGAAGTAGAGATCATTGATAGTGTTATAGAGAAAGAGATCATTTTAGGGACTCTAACAACTGGAGACATGTTTGGAGAAGTTGGTGCACTTTGTTGTAGGTCTCAAAGTTATACATATAGAACCAAGACTTTCACAGAGCTTCTGAGGTTGAAAACCAGTGCTCTTATAGAATCAATGCATATTAAAAAAGAAGATAATATATTAATTCTCAAAAATTTCCTTCAGCATTATAAGGAGCTTAAGGATTTGAGTATCAAAGATGTAATGATGGAGACTGTTGAAGAAGAGGATCCTAACATGGCTGTGAATTTGTTAACTGTGGCTGGCACAGGTAATGCTGCTTTTCTTGAGGAGCTTCTGAGAACTGGTTTGGATCCTGATATTGGTGACTCAAAAGGAAAATCTCCATTGCACATAGCCGCATCAAATGGACATGAAGAGTGTATTAAAGTCTTGCTCAAACATACATGCAACATACACATAAAAGATATGAATGGTAACACTGCACTATGGTATGCAATAGCTTCAAAACATTACTCAATCTTCAGAATCCTCTATCAGCTTTCTGCACTTTCTGATCCATACACAGCAGGGAATCTTCTATGTCAAGCAACAAAAAGAAACGATTTAACCGTGATGAATGAGCTTTTAAAGCAAGGACTAAACATCGACTCGAAAGATGGACACGGCACGAAAGCTATACAAATTGCTATAACTGAAAATCTTGTTGACATGGCTCAGTTGCTTGTTATGAACGGTGCAGACGTTGCTGATATACATACTCATGAATTTTCCGCATCCACCTTAGATGAACTGTTGCAGAAACGCGAAATCGGGCATTTAATTAATGTAAATGAGGCAATGTCTAGTGAGTTTGTATTAAAGGGTGAAAATCAAGAAGAACATAAACACATTTGGGGAAGATATAATGTAGTAGAGTGTCCAAGAGTAAGCATATATAGAGGTCACCCTATTGTGAGAAGAGAAAAAGGTTTCACTGAAGCGGGAAAGTTAATAAAATTGCCTGATTCATTAGAGAAGCTCAAAATTATAGCAGGTGAAAAATTTGAGTTTGATGCAAGAGATGCAATGGTGACAAATGAAGAAGGAGCAGAAATTAACAGTATTGATGTGATCAGAGATAATGATAAACTTTTTATTGTTGAATAG 2445 0.3734 MEINISSYDSSSLNRKQHDDTRQDYTSSSSFNLSNVSKLILPPLGVPKENQVYSKWIISPMDSRYRWWESFMVVLVAYTAWVYPFEVAFMHSSNRELYIVDNIVDLFFAIDIVMTFFVAFIDGTTHLLVRDSKKIALRYLSSWFIMDVASTIPYEAIGYIGTHKLSLPYFLLGMLRFWRIRRVKQFFTRLEKDIRFSYFWVRCARLLSVTLFSVHCAGCLYYMLADRYPQKGKTWIGAVIPNFKETSPRTRYISAIYWSITTMTTVGYGDLHAVNTMEMIFIIFYMLFNLGLTSYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVYRNRLPPMLKEQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFFPTVEKVYLFKGVSKETLLSLVAKMNAEYIPPKEDVIMQNEAPDDVYIIVSGEVEIIDSVIEKEIILGTLTTGDMFGEVGALCCRSQSYTYRTKTFTELLRLKTSALIESMHIKKEDNILILKNFLQHYKELKDLSIKDVMMETVEEEDPNMAVNLLTVAGTGNAAFLEELLRTGLDPDIGDSKGKSPLHIAASNGHEECIKVLLKHTCNIHIKDMNGNTALWYAIASKHYSIFRILYQLSALSDPYTAGNLLCQATKRNDLTVMNELLKQGLNIDSKDGHGTKAIQIAITENLVDMAQLLVMNGADVADIHTHEFSASTLDELLQKREIGHLINVNEAMSSEFVLKGENQEEHKHIWGRYNVVECPRVSIYRGHPIVRREKGFTEAGKLIKLPDSLEKLKIIAGEKFEFDARDAMVTNEEGAEINSIDVIRDNDKLFIVE* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g5072 814 SMART ANK_2a 557 586 IPR002110 GO:0005515
Psa1g5072 814 SMART ANK_2a 524 553 IPR002110 GO:0005515
Psa1g5072 814 SMART ANK_2a 590 620 IPR002110 GO:0005515
Psa1g5072 814 SMART ANK_2a 654 683 IPR002110 GO:0005515
Psa1g5072 814 SMART ANK_2a 621 650 IPR002110 GO:0005515
Psa1g5072 814 SUPERFAMILY cAMP-binding domain-like 309 500 IPR018490 -
Psa1g5072 814 MobiDBLite consensus disorder prediction 1 20 - -
Psa1g5072 814 SMART cnmp_10 382 499 IPR000595 -
Psa1g5072 814 ProSiteProfiles KHA domain profile. 741 814 IPR021789 -
Psa1g5072 814 Pfam KHA, dimerisation domain of potassium ion channel 740 812 IPR021789 -
Psa1g5072 814 ProSiteProfiles Ankyrin repeat profile. 557 589 IPR002110 GO:0005515
Psa1g5072 814 CDD CAP_ED 382 485 IPR000595 -
Psa1g5072 814 PRINTS EAG/ELK/ERG potassium channel family signature 78 85 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa1g5072 814 PRINTS EAG/ELK/ERG potassium channel family signature 101 111 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa1g5072 814 PRINTS EAG/ELK/ERG potassium channel family signature 112 121 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa1g5072 814 PRINTS EAG/ELK/ERG potassium channel family signature 252 269 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa1g5072 814 PRINTS EAG/ELK/ERG potassium channel family signature 278 289 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa1g5072 814 PRINTS EAG/ELK/ERG potassium channel family signature 296 305 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa1g5072 814 PANTHER POTASSIUM CHANNEL AKT2/3-LIKE 18 814 - -
Psa1g5072 814 SUPERFAMILY Ankyrin repeat 526 684 IPR036770 -
Psa1g5072 814 ProSiteProfiles Ankyrin repeat region circular profile. 557 588 - -
Psa1g5072 814 Gene3D - 526 706 IPR036770 -
Psa1g5072 814 ProSiteProfiles cAMP/cGMP binding motif profile. 382 501 IPR000595 -
Psa1g5072 814 SUPERFAMILY Voltage-gated potassium channels 60 305 - -
Psa1g5072 814 Pfam Ankyrin repeats (3 copies) 536 612 IPR002110 GO:0005515
Psa1g5072 814 Gene3D Jelly Rolls 350 524 IPR014710 -
Psa1g5072 814 Gene3D - 68 305 - -
Psa1g5072 814 Pfam Ion transport protein 65 311 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Psa1g5072 814 Pfam Cyclic nucleotide-binding domain 402 482 IPR000595 -
Psa1g5072 814 PRINTS Ankyrin repeat signature 558 573 IPR002110 GO:0005515
Psa1g5072 814 PRINTS Ankyrin repeat signature 670 684 IPR002110 GO:0005515
Psa1g5072 814 PANTHER POTASSIUM CHANNEL AKT1 18 814 IPR045319 GO:0005249|GO:0006813
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g5072 Psa-Chr1 369957967 369966540 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g5072 22 562 Ion Channels AT4G22200 72.232 0.0 817
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g5072 K21867 - gmx:100798422 1293.87