Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g5070 ATGGAACTATCAGATTTGCAAAACAACAAACAGAAGAGAGGCACCACCACTTTTCCCCACCACCAACACCAACCACAACAGCAACAAGAATCTTCACCTTCCAATTCTCATTCTCAGCCGCAACAACAACAACTTGTGGTCCCTTTTGATGGAAGGCCACCACCACCTTTCATTATGGGCTCCATCTCCAATATTCAACCTTCTTCAAACTCTTCATCTTCTTCCTCAAATTCTTCCTCTTCTTCCGCCTCAGCTTCTGCAACTACGCCTCATCTTATTGACGCTTCTCTCGCAATCGCCACCAGATCTGAACCTCCGGTACTCGACTCCACCGCTGTAGCCAACAACAATAACAGTAATAGTCAGATTCAACAATTCTCTTCTTCATCCACAGCCGTCACGGTAGCCAATCCTCCCAAACGATCCACTAAGGACAGACACACGAAAGTCGATGGCCGGGGACGAAGAATTCGAATGCCGGCGACATGTGCAGCTAGAGTTTTTCAGTTGACCAGAGAATTAGGCCATAAATCCGACGGTGAAACAATTGAATGGCTTCTCCAGCAAGCGGAACCGGCTATTATTGCCGCCACCGGCACAGGAACAATCCCGGCTAATTTCTCAACACTCAATGTTTCACTTCGAAGCAGCGGCTCCACGCTGTCGGCGCCGCCGTCGAAATCAGCTCCTCATAGTTTTCACGGCGCGCTTGGACTGGCACACCATCCTTACGAAGAAGCTTCATACCAACACGCGCCTCTTCTAGGGTTTCATCCTCATCAACACCAACAACATCTCATGAACGCCGATCAAATCGGTGAAGCGCTTTCTAATGAGAATTACATGAGAAAACGCTATAGAGAAGATCTTTTCAAAGACGAAAACAACAACAACGAAAGCGGTGGTGATGGTTCTTCTTCTCCAAAAGCTTACAAAACAAATCACCAGCAAGATAGTATTGGTGATGGTGAAGGTGGAGGAGGAGGAGGGGGAGGAGGTGGAGTCTCTTCATCCTCTTCTCCCGGTAATTCTATTTCTGGACTTCTTAGACCGTCGAATATGTTACCGGCAACAGCCATGTGGGCCACCGCGGGTAGTGGAAGTACAATATGGATGGTACCAGTGAGTGGTGGTGGCGGTGGTGGAGGTGCTGCAACCACGAATTCAGAGACACAAACACAAAACATGTGGCCTTTTAGTCCTCATACTCAGTCTCAAAATCAAGCAAACGCTACTGCAACACCGTCTCAGTTACATTTCATGCCAAGGTTCAATCTTCCTCCCGGTGGTGGTGGTGGCGGTGTTGAATTCCAAGGTGGACGCGGTGGTTTACAACTGGGTTCAGTGTATCAGCCGTCACAGCATCTTGGATTAGCAGTGTCTGATTCAAACTTGGGTATGTTGGCTGCTCTTAATGCTTACACAAGAGCTGGTCATTTCAATGTTAACAACTCTTCCTCCGATCATCAACATCATCACCATCATTCAATGTCATTGGATTCTCATCCTCAACCTAATGATGAAAGCGGAGAAGATGCTCCTAATAATTCTCAATAA 1557 0.4733 MELSDLQNNKQKRGTTTFPHHQHQPQQQQESSPSNSHSQPQQQQLVVPFDGRPPPPFIMGSISNIQPSSNSSSSSSNSSSSSASASATTPHLIDASLAIATRSEPPVLDSTAVANNNNSNSQIQQFSSSSTAVTVANPPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTLSAPPSKSAPHSFHGALGLAHHPYEEASYQHAPLLGFHPHQHQQHLMNADQIGEALSNENYMRKRYREDLFKDENNNNESGGDGSSSPKAYKTNHQQDSIGDGEGGGGGGGGGGVSSSSSPGNSISGLLRPSNMLPATAMWATAGSGSTIWMVPVSGGGGGGGAATTNSETQTQNMWPFSPHTQSQNQANATATPSQLHFMPRFNLPPGGGGGGVEFQGGRGGLQLGSVYQPSQHLGLAVSDSNLGMLAALNAYTRAGHFNVNNSSSDHQHHHHHSMSLDSHPQPNDESGEDAPNNSQ* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g5070 518 PANTHER TRANSCRIPTION FACTOR TCP8 26 518 - -
Psa1g5070 518 MobiDBLite consensus disorder prediction 486 507 - -
Psa1g5070 518 MobiDBLite consensus disorder prediction 485 518 - -
Psa1g5070 518 MobiDBLite consensus disorder prediction 1 87 - -
Psa1g5070 518 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 26 518 IPR005333 GO:0003700
Psa1g5070 518 MobiDBLite consensus disorder prediction 1 46 - -
Psa1g5070 518 ProSiteProfiles TCP domain profile. 143 197 IPR017887 -
Psa1g5070 518 Pfam TCP family transcription factor 142 291 IPR017887 -
Psa1g5070 518 MobiDBLite consensus disorder prediction 122 138 - -
Psa1g5070 518 MobiDBLite consensus disorder prediction 297 316 - -
Psa1g5070 518 MobiDBLite consensus disorder prediction 291 316 - -
Psa1g5070 518 MobiDBLite consensus disorder prediction 61 87 - -
Psa1g5070 518 MobiDBLite consensus disorder prediction 122 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g5070 Psa-Chr1 369909881 369915082 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g5070 140 464 TCP Transcription Factor Family AT1G35560 44.880 3.38e-63 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Psa1g5070 TCP 7.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g5070 - - qsu:111997570 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g5070 1 369909881 369915082 Psa1g5070 1 369909881 369915082 ECH