Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g5063 ATGATTTTGATTGGTATAAGCCCTAATTCAGCTGCTGATTTATCATATACATTCTACGATAAATCTTGTCCGAAAGCTCTTCGCACAATTAGGAAAACAGTTCAAGATGCTGTTTTTAACGAGCCTCGCATGGGAGCTTCTATACTTCGACTCCATTTTCATGACTGCTTTGTTCTTCTTGGTGGAAAAAGATGGAATGTACTATTAGGAAGAAGAGATTCAACAACAGCAAGCTTGGATTTATCAAATTCTGACTTACCTAGTCCTTCTATGGATCTTGATGGCCTTATCACTGCTTTTGCCAAGAAAAATTTCACTACTGAAGAAATGGTTGCTTTATCAGGTGGTCACACAATTGGCAATGTGAGATGCCAATTTTTCAGATCAAGGATATACAATGAGACAAACATAGACCCTAAATTTGCTACAACAATGCAAGCATTATGTCCATTTGAAGGTGGTGATGATGATTTATCTCCATTTGATTCAACCACACCAAATAATTTCGACAATGCTTTCTACGCTAACTTGGTTCAAAACAAAGGTCTAGTACACTCTGATCAACAACTATTTGCTAATGCAACATCATCCACAAGCTCTCAAGTAAGAACATATAGCAGAAACAACGGACGTTTCAAAAGAGATTTTGCAGCTGCAATGTTCAAGATGACAATGCTCAGTCCACTTACTGGCAATGATGGCCAGATTAGGACTAATTGCAGATTTGTTAATTAA 735 0.3728 MILIGISPNSAADLSYTFYDKSCPKALRTIRKTVQDAVFNEPRMGASILRLHFHDCFVLLGGKRWNVLLGRRDSTTASLDLSNSDLPSPSMDLDGLITAFAKKNFTTEEMVALSGGHTIGNVRCQFFRSRIYNETNIDPKFATTMQALCPFEGGDDDLSPFDSTTPNNFDNAFYANLVQNKGLVHSDQQLFANATSSTSSQVRTYSRNNGRFKRDFAAAMFKMTMLSPLTGNDGQIRTNCRFVN* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g5063 244 PRINTS Plant peroxidase signature 23 42 IPR000823 GO:0004601|GO:0006979|GO:0020037
Psa1g5063 244 PRINTS Plant peroxidase signature 47 67 IPR000823 GO:0004601|GO:0006979|GO:0020037
Psa1g5063 244 PANTHER PEROXIDASE 72-RELATED 9 58 IPR000823 GO:0004601|GO:0006979|GO:0020037
Psa1g5063 244 PANTHER PEROXIDASE 72-RELATED 58 243 IPR000823 GO:0004601|GO:0006979|GO:0020037
Psa1g5063 244 CDD secretory_peroxidase 14 243 IPR033905 GO:0004601|GO:0042744
Psa1g5063 244 Pfam Peroxidase 60 207 IPR002016 GO:0004601|GO:0006979|GO:0020037
Psa1g5063 244 Gene3D - 14 58 - -
Psa1g5063 244 ProSitePatterns Peroxidases active site signature. 45 56 IPR019794 GO:0004601
Psa1g5063 244 ProSiteProfiles Plant heme peroxidase family profile. 46 244 IPR002016 GO:0004601|GO:0006979|GO:0020037
Psa1g5063 244 PANTHER PEROXIDASE 58 243 - -
Psa1g5063 244 PANTHER PEROXIDASE 9 58 - -
Psa1g5063 244 ProSitePatterns Peroxidases proximal heme-ligand signature. 109 119 IPR019793 -
Psa1g5063 244 Gene3D Peroxidase, domain 2 87 223 - -
Psa1g5063 244 PRINTS Haem peroxidase superfamily signature 45 59 IPR002016 GO:0004601|GO:0006979|GO:0020037
Psa1g5063 244 PRINTS Haem peroxidase superfamily signature 162 177 IPR002016 GO:0004601|GO:0006979|GO:0020037
Psa1g5063 244 Gene3D - 59 241 - -
Psa1g5063 244 SUPERFAMILY Heme-dependent peroxidases 13 244 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g5063 Psa-Chr1 369690139 369691764 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g5063 12 58 Peroxidase AT5G05340 59.574 3.29e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g5063 K00430 - gmx:100802244 280.026