Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g5058 ATGGAGAACAATTTCAGTTCATATAATTCTTCTAGCTTGAAGAGAAAACATCATCATGATGTTAAAGAAGATTATACATCATCTTCATCTTTCAATCTTAGGAATGTTTCAAAACTCATTCTTCCACCACTTGGTGTTTCTAGAGAGAATCAAGTTTACTCAAGATGGATCATTTCACCAATGGATTCTAGATACAGGTGTTGGGAGAGTTTTATGGTTGTTTTGGTAGCATATTCTGCATGGGCTTATCCCTTTGAAGTTGCTTTCATGCATTCTTCTCCAAATAGAAAACTCTACATTGTGGACAATATTGTTGATCTTTTCTTTGCCATTGATATTGTTATGACATTCTTTTTGGCATTCATTGATGGAACTACTCATCTACTGGTCAGAGATTCCAAAAAAATTGTTCTAAGGTACTTGTCAACATGGTTCATAATGGATGTGGCATCCACAATACCATATGAAGCAATAGGCTTTATTTTAACTGGCAAACACAAATTGGGCCTCCCTTACTTCCTCTTAGGAATGCTCAGATTTTGGAGAATCAGACGTGTCAAACAATTCTTCACAAGGCTTGAAAAAGACATCAGATTCAGCTATTTCTGGGTCAGATGTGCTAGGCTTCTTTCTGTCACACTTTTTTCAATTCATTGTGCTGGCTGTCTCTACTACATGCTAGCTGATAGGTACCCTCATCAAGGAAACACATGGATTGGAGCTGTCATTCCAAATTTCAGAGAGACAAGTCCTAGAACCAGATACATTTCAGCCATCTACTGGTCCATCACCACCATGACAACTGTTGGTTATGGCGATCTTCATGCTGTCAACACCATGGAAATGATTTTCATTATCTTCTATATGCTCTTCAACCTTGGCCTAACTGCTTACTTGATTGGTAACATGACAAATCTTGTAGTCGAAGGAACTCGTCGCACGATGGAATTTAGAAATAGCATTGAAGCAGCATCAAACTTTGTGTGCCGAAATAGGTTGCCTCCGAGGTTAAAAGAACAGATTCTTGCTTACATGTGTTTGAGATTTAAGGCGGAGAGATTGAATCAGCATCAGTTAATCGAACAGCTTCCGAAATCAATTTGCAAAAGTATTTGCCAGCATTTGTTTTTTCCAACTGTGGAGAAAGTCTATCTCTTCAAAGGCGTCTCGAAAGAAATCCTTTTGTCCCTAGTTGCGAAAATGAATGCGGAATATATACCACCTAAAGAGGATGTTATAATGCAGAATGAAGCACCGGATGATGTTTACATTATAGTGTCCGGAGAAGTTGAGATCATTGATAGTGTGATAGAGAAAGAGAGAGTTTTAGGGACTCTAACAAGAGGAGACATGTTTGGAGAAGTTGGTGCACTTTGTTGCAGGTCTCAAAGCTATACCTATAGAAGCAAGACTCTTACACAGCTTCTGAGGTTGAAAACCAATGTTCTTATAGAAGCAATGCAGATTAAAAAAGAAGATAATATACTAATACTCAAAAATTTCCTTCAGCATTATAAGCAGCTTAAGGATTTGACTATCAAAGATTTAATGGTGGAGAATGTTGAAGAAGAGGATCCTAACATGGCTGTGAATTTGTTAACTGTGGCTAGCACAGGTAATGCTGCTTTTCTTGAGGAGCTTCTAAGAGCTGGTTTGGATCCTGATATTGGTGACTCAAAAGGGAAAACTCCTTTGCACATAGCAGCATCAAATGGACATGAAGAGTGTGTTAGAGTCTTGCTCAAACATACATGCAACATACATATAAAAGATATGAATGGTAACACTGCACTATGGTATGCTATAGCTTCAAAACATTACTCAATCTTCAGAATCCTCTATCAGCTTTCTGCACTTTCTGATCCATACACAGCAGGGAATCTTCTATGTCTAGCAGCAAAAAGAAACGATTTAACCGTGATGAACGAGCTTTTAAAGCAAGGACTAAACATCGACTCGAAAGATGGACACGGCACGAAAGCTATACAGATTGCTATAACAGAAAATCTTGTTGACATGGTTCAGTTGCTTGTTATGAACGGCGCAGAAGTTGCTGATATACATACTCATGAATTTTCTGCATCGACCTTAAATGAGCTACTTCAGAAACGCGAAATTGGACATCTAATTAATGTGAATGAGGAAATGCCCAGTGAATTTGTATTAGAAGGTGAAAATAAAGAACATAAACAAATTTGGAGAAGATATAATGGAGTAGAGTTTCCAAGAGTAAGTATATATAGAGGTCACCCTATAGTGAGAAGAGAAAAAGGTTTCAATGAAGCCGGGAAGTTAATAAAATTGCCCGATTCATTAGAAAAGCTCAAAATTATCGCAGGTGAAAAATTTGAGTTTGATGCTAGAGATGCAATGGTGACAAATGAAGAAGGAGCAGAAATAGATAGTATTGATGTGATAAGAGACAATGACAAAGTTTTTATTGTTGAATAG 2451 0.3749 MENNFSSYNSSSLKRKHHHDVKEDYTSSSSFNLRNVSKLILPPLGVSRENQVYSRWIISPMDSRYRCWESFMVVLVAYSAWAYPFEVAFMHSSPNRKLYIVDNIVDLFFAIDIVMTFFLAFIDGTTHLLVRDSKKIVLRYLSTWFIMDVASTIPYEAIGFILTGKHKLGLPYFLLGMLRFWRIRRVKQFFTRLEKDIRFSYFWVRCARLLSVTLFSIHCAGCLYYMLADRYPHQGNTWIGAVIPNFRETSPRTRYISAIYWSITTMTTVGYGDLHAVNTMEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVCRNRLPPRLKEQILAYMCLRFKAERLNQHQLIEQLPKSICKSICQHLFFPTVEKVYLFKGVSKEILLSLVAKMNAEYIPPKEDVIMQNEAPDDVYIIVSGEVEIIDSVIEKERVLGTLTRGDMFGEVGALCCRSQSYTYRSKTLTQLLRLKTNVLIEAMQIKKEDNILILKNFLQHYKQLKDLTIKDLMVENVEEEDPNMAVNLLTVASTGNAAFLEELLRAGLDPDIGDSKGKTPLHIAASNGHEECVRVLLKHTCNIHIKDMNGNTALWYAIASKHYSIFRILYQLSALSDPYTAGNLLCLAAKRNDLTVMNELLKQGLNIDSKDGHGTKAIQIAITENLVDMVQLLVMNGAEVADIHTHEFSASTLNELLQKREIGHLINVNEEMPSEFVLEGENKEHKQIWRRYNGVEFPRVSIYRGHPIVRREKGFNEAGKLIKLPDSLEKLKIIAGEKFEFDARDAMVTNEEGAEIDSIDVIRDNDKVFIVE* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g5058 816 ProSiteProfiles Ankyrin repeat region circular profile. 560 591 - -
Psa1g5058 816 ProSiteProfiles cAMP/cGMP binding motif profile. 385 504 IPR000595 -
Psa1g5058 816 PRINTS EAG/ELK/ERG potassium channel family signature 102 112 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa1g5058 816 PRINTS EAG/ELK/ERG potassium channel family signature 113 122 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa1g5058 816 PRINTS EAG/ELK/ERG potassium channel family signature 255 272 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa1g5058 816 PRINTS EAG/ELK/ERG potassium channel family signature 281 292 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa1g5058 816 PRINTS EAG/ELK/ERG potassium channel family signature 299 308 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa1g5058 816 CDD CAP_ED 385 488 IPR000595 -
Psa1g5058 816 ProSiteProfiles Ankyrin repeat profile. 560 592 IPR002110 GO:0005515
Psa1g5058 816 Pfam KHA, dimerisation domain of potassium ion channel 742 814 IPR021789 -
Psa1g5058 816 Pfam Cyclic nucleotide-binding domain 405 488 IPR000595 -
Psa1g5058 816 SUPERFAMILY cAMP-binding domain-like 312 503 IPR018490 -
Psa1g5058 816 SMART ANK_2a 527 556 IPR002110 GO:0005515
Psa1g5058 816 SMART ANK_2a 560 589 IPR002110 GO:0005515
Psa1g5058 816 SMART ANK_2a 593 623 IPR002110 GO:0005515
Psa1g5058 816 SMART ANK_2a 657 686 IPR002110 GO:0005515
Psa1g5058 816 SMART ANK_2a 624 653 IPR002110 GO:0005515
Psa1g5058 816 SUPERFAMILY Voltage-gated potassium channels 60 308 - -
Psa1g5058 816 PRINTS Ankyrin repeat signature 561 576 IPR002110 GO:0005515
Psa1g5058 816 PRINTS Ankyrin repeat signature 673 687 IPR002110 GO:0005515
Psa1g5058 816 ProSiteProfiles KHA domain profile. 743 816 IPR021789 -
Psa1g5058 816 PANTHER POTASSIUM CHANNEL AKT1 28 816 IPR045319 GO:0005249|GO:0006813
Psa1g5058 816 Gene3D - 529 710 IPR036770 -
Psa1g5058 816 Gene3D - 66 308 - -
Psa1g5058 816 SUPERFAMILY Ankyrin repeat 520 687 IPR036770 -
Psa1g5058 816 SMART cnmp_10 385 502 IPR000595 -
Psa1g5058 816 Pfam Ion transport protein 66 314 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Psa1g5058 816 PANTHER POTASSIUM CHANNEL AKT2/3-LIKE 28 816 - -
Psa1g5058 816 Gene3D Jelly Rolls 353 527 IPR014710 -
Psa1g5058 816 Pfam Ankyrin repeats (3 copies) 536 614 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g5058 Psa-Chr1 369366231 369374270 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g5058 13 565 Ion Channels AT4G22200 73.132 0.0 849
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g5058 K21867 - gmx:100798422 1352.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g5058 1 369366231 369374270 Psa1g5058 1 369366231 369374270 ECH